SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene12654

Length: 923 nt

Origin of reads: Biogeco1 v2 Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene12654

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Zinc-finger domain of monoamine-oxidase A repressor R1 [Arabidopsis thaliana] dbj\|BAF00863.1\| hypothetical protein [Arabidopsis thaliana] gb\|AEE86755.1\| Zinc-finger domain of monoamine-oxidase A repressor R1 [Arabidopsis thaliana]	-	-	2.0e-18	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Blast2go	protein	-	-	0.0	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc-finger domain of monoamine-oxidase A repressor R1	IPR018866	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
32		25		75	0.996473
34	75			25	0.996473
36			25	75	0.996473
37		75		25	0.996473
38		75	25		0.996473
40		25		75	0.996473
41		25		75	0.996473
46		25	75		0.996473
47	75			25	0.996473
48	75		25		0.996473
50		25		75	0.996473
51	25			75	0.996473
55		25	75		0.996473
56	25	75			0.996473
140	20	80			0.995493
164		60		40	1.0
180		60		40	1.0
267			85	14	0.993533
268	85	14			0.993533
272		14	85		0.993533
273	85	14			0.993533
274	85			14	0.993533
275	85			14	0.993533
279	85			14	0.993533
280			14	85	0.993533
283	85	14			0.993533
285		14		85	0.993533
286		85		14	0.993533
573		12		87	0.992554
575		12		87	0.992554
637	80	20			0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
613	626	GCA GCA GCA GCA GC	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain