SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene12646

Length: 532 nt

Origin of reads: Biogeco3 v1

UniGene Fasta

>sp_v2.0_unigene12646
AATGTAGTGTCAGGTGCTGTGGACATACTGCCATGCAAAGACAAGGATAGAACAGAGCAGACTGTTGGGTTGTCCCAGCCGGGTGATATTTTCGGAGAAATTGGAGTGCTCTGTTACAGACCACAACCATACACAGTCCATACAAAGAGGCTTTCTCAACTTTTGCGACTAAACCGCAATTTATTCATGAATATTGTGCAATCCAATATTGAAGACGGAAAGACTATCATGAACAACCTTCTTAAGCATTTGAAGGAACTGAAAGACCCAATTTTTGGAGAAATGTCAAATGAGATAGAGCAGTCGCTAGCAAAAGGAACTATGGATGTACCCGTTAGTCTATGTTTTGTAGCTTCAATAGGAGATACTCTTCTAATGGAACAACTATTGAAAAATGGGATGGATCCTAATGAATCAGACAGCAACAGCCGCACGCCCTTGCACATTGCAACAGCATATGGTTTGGAAGATTGCGTTAAACTCCTGCTGCAATATGGGGCAGATGTCAATAGCAAGGATGAGGATGGAAGTG

Ace file of the UniGene sp_v2.0_unigene12646

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Inward rectifying shaker-like K+ channel n=4 Tax=Vitis vinifera RepID=D0R6Q1_VITVI	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	41%
Blast2go	potassium channel	-	-	74%

Source	GOs	Term	Type	Identity
Blast2go	ion transport	GO:0006811	Biological Process	74%
Blast2go	cyclic nucleotide binding	GO:0030551	Molecular Function	74%
Blast2go	protein binding	GO:0005515	Molecular Function	74%
Blast2go	inward rectifier potassium channel activity	GO:0005242	Molecular Function	74%
Blast2go	membrane	GO:0016020	Cellular Component	74%

Source	InterPros	Term	Type	Identity
Sma3	Cyclic nucleotide-binding domain	IPR000595	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	Potassium channel, voltage-dependent, EAG/ELK/ERG	IPR003938	-	-
Sma3	Ion transport	IPR005821	-	-
Sma3	RmlC-like jelly roll fold	IPR014710	-	-
Sma3	Cyclic nucleotide-binding, conserved site	IPR018488	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPV4

Fln msg: Distance to subject end: 38 aas, your sequence is shorter than subject: 177 - 659

Fln protein: NVVSGAVDILPCKDKDRTEQTVGLSQPGDIFGEIGVLCYRPQPYTVHTKRLSQLLRLNRNLFMNIVQSNIEDGKTIMNNLLKHLKELKDPIFGEMSNEIEQSLAKGTMDVPVSLCFVASIGDTLLMEQLLKNGMDPNESDSNSRTPLHIATAYGLEDCVKLLLQYGADVNSKDEDGS

Protein Length: 178

Fln nts: AATGTAGTGTCAGGTGCTGTGGACATACTGCCATGCAAAGACAAGGATAGAACAGAGCAGACTGTTGGGTTGTCCCAGCCGGGTGATATTTTCGGAGAAATTGGAGTGCTCTGTTACAGACCACAACCATACACAGTCCATACAAAGAGGCTTTCTCAACTTTTGCGACTAAACCGCAATTTATTCATGAATATTGTGCAATCCAATATTGAAGACGGAAAGACTATCATGAACAACCTTCTTAAGCATTTGAAGGAACTGAAAGACCCAATTTTTGGAGAAATGTCAAATGAGATAGAGCAGTCGCTAGCAAAAGGAACTATGGATGTACCCGTTAGTCTATGTTTTGTAGCTTCAATAGGAGATACTCTTCTAATGGAACAACTATTGAAAAATGGGATGGATCCTAATGAATCAGACAGCAACAGCCGCACGCCCTTGCACATTGCAACAGCATATGGTTTGGAAGATTGCGTTAAACTCCTGCTGCAATATGGGGCAGATGTCAATAGCAAGGATGAGGATGGAAGTG

Fln Alignment:

Contig12646___VVSGAVDILPCKDKDRTEQTVGLSQPGDIFGEIGVLCYRPQPYTVHTKRLSQXXXXXXXXFMNIVQSNIEDGKTIMNNLLKHLKELKDPIFGEMSNE
B8LPV4_______________LVSGEVEMLTCENGN--EQVVESLRAGGLFGEIGVLYDKPQHLTVRTKKLSQLLRLSGSVLLDKMQTRPTEAKVILRNFLQHFNGSKQLGIENWSNE

SNPs (tot: 3)

Position	A %	C %	T %	Probability
222	33	33	33	0.997753
224	66		33	0.997452
225		33	66	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain