SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene12609

Length: 854 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene12609

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	B3 domain-containing transcription repressor VAL2 [Arabidopsis thaliana] sp\|Q5CCK4.1\|VAL2_ARATH RecName: Full=B3 domain-containing transcription repressor VAL2; AltName: Full=Protein HIGH-LEVEL EXPRESSION OF SUGAR-INDUCIBLE-LIKE 1; AltName: Full=Protein V	-	-	74%
FL-Next	tr=VP1/ABI3-like protein; Callitropsis nootkatensis.	-	-	34%
Blast2go	b3 domain-containing protein os07g0679700-like	-	-	83%

Source	GOs	Term	Type	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	83%
Blast2go	DNA binding	GO:0003677	Molecular Function	83%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	83%
Blast2go	nucleus	GO:0005634	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Target SNARE coiled-coil domain	IPR000727	-	-
Sma3	B3 DNA binding domain	IPR003340	-	-
Sma3	Syntaxin/epimorphin, conserved site	IPR006012	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Zinc finger, CW-type	IPR011124	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-

Full-Lengther Next Prediction

SNPs (tot: 3)

Position	A %	C %	T %	Probability
164	40	60		1.0
219	60	40		1.0
353		60	40	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain