SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene12559

Length: 1553 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene12559

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cellulose synthase n=1 Tax=Pinus radiata RepID=Q4VWW7_PINRA	-	-	98%
FL-Next	tr=Cellulose synthase; Pinus radiata (Monterey pine) (Pinus insignis).	-	-	98%
Blast2go	cellulose synthase	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	Cellulose synthase (UDP-forming).	EC:2.4.1.12	-	0.0	83%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	83%

Source	GOs	Term	Type	Identity
Blast2go	cellulose biosynthetic process	GO:0030244	Biological Process	83%
Blast2go	cellular cell wall organization	GO:0007047	Biological Process	83%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	83%
Blast2go	cellulose synthase (UDP-forming) activity	GO:0016760	Molecular Function	83%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	83%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	83%
Blast2go	integral to membrane	GO:0016021	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	Pyridine nucleotide-disulphide oxidoreductase, class-II	IPR000103	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Cellulose synthase	IPR005150	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Gonadotropin, beta subunit, conserved site	IPR018245	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q4VWW7

Fln msg: Distance to subject end: 488 aas, your sequence is shorter than subject: 517 - 1096

Fln protein: MCSPQVDGDKEDECADNLDHDFNSTQGNRNEKQQIAEAMLHWQMAYGRGEDVGPSRSESQELPQLQVPLITNGQAISGELPAGSSEYHRIAAPPTGGGSGKRVHPLPFPDSTETGRVRVEDPAKDFNSYGFGNVAWKERVESWKNKQDKNTLQVTSDTYYASEGKDGDMDGCVADEEDLQMSDEARQPLSRKVPIASSKINPYRMVIVLRLVILCFFFRYRILNPVYNAYGLWFTSVICEIWFAISWILDQFPKWLPINRETYLDRLCLRYDREGEPSQLAAVDIFVSTVDPMKEPPLVTANTVLSILSVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFVKKFDIEPRAPEWYFAQKIDYLKDKVQPSFVKERRAMKREYEEFKVRINALVAKAQKVPEEGWIMQDGTPWPGNNTRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFEHHKKAGAMNSLVRVSAVLTNGPYMLNLDCDHYINNSRALREAMCFMMDPTLGKKV

Protein Length: 518

Fln nts: AATGTGTAGCCCTCAAGTGGATGGTGACAAGGAAGATGAATGTGCAGATAATTTGGATCATGACTTCAACTCCACTCAGGGTAACAGGAACGAAAAACAGCAGATTGCAGAGGCCATGTTGCATTGGCAAATGGCCTATGGACGAGGGGAGGATGTTGGTCCATCACGCTCAGAAAGTCAGGAGCTTCCTCAGCTTCAAGTTCCCCTTATTACCAATGGACAAGCGATTTCCGGTGAGTTGCCAGCAGGATCCTCAGAGTATCATAGGATTGCTGCTCCACCCACTGGTGGTGGCAGTGGGAAGCGTGTTCATCCACTTCCTTTTCCTGATTCGACCGAAACAGGTCGAGTGAGAGTTGAGGACCCTGCCAAAGATTTCAATTCCTATGGATTTGGAAATGTTGCCTGGAAGGAGAGAGTAGAAAGCTGGAAGAATAAACAGGACAAAAATACATTGCAAGTGACTAGTGATACTTACTATGCGTCTGAAGGAAAGGATGGAGACATGGATGGTTGTGTTGCAGATGAGGAAGACCTTCAAATGAGTGATGAAGCACGCCAGCCCCTATCAAGAAAGGTTCCTATTGCTTCTTCCAAGATCAATCCGTACAGGATGGTGATTGTTCTACGGCTTGTGATCTTGTGTTTTTTCTTCCGCTACCGAATATTGAATCCTGTTTACAATGCTTATGGACTTTGGTTTACGTCAGTAATATGTGAGATTTGGTTTGCCATATCCTGGATTCTTGATCAGTTTCCTAAATGGCTTCCCATCAATAGGGAAACTTATCTTGACAGGCTTTGTTTGAGATACGATAGAGAAGGAGAGCCATCTCAGTTGGCTGCTGTTGATATTTTTGTCAGCACAGTTGATCCTATGAAGGAGCCTCCTCTTGTGACGGCAAATACTGTTTTGTCAATTCTTTCTGTGGACTATCCAGTTGATAAAGTTTCATGTTATGTGTCTGACGATGGAGCTGCAATGCTAACATTTGAAGCCCTTTCTGAAACCTCAGAATTTGCAAGGAAATGGGTGCCATTTGTTAAAAAATTTGATATTGAACCCAGGGCTCCAGAGTGGTATTTTGCTCAAAAGATAGACTATCTGAAGGATAAAGTGCAACCTTCCTTTGTAAAAGAACGCAGAGCAATGAAGAGAGAATATGAAGAGTTCAAGGTCCGAATCAATGCTCTTGTTGCTAAAGCCCAGAAGGTTCCTGAAGAAGGCTGGATTATGCAAGATGGAACACCTTGGCCTGGAAATAATACCCGGGACCATCCTGGGATGATACAGGTGTTCTTAGGTCATAGTGGTGGGCTTGACACTGATGGCAATGAACTACCTCGACTTGTATATGTTTCTCGTGAAAAGAGACCTGGTTTTGAACACCACAAAAAAGCTGGTGCAATGAATTCATTGGTTCGTGTTTCGGCAGTTCTTACCAATGGCCCTTATATGCTCAATCTTGATTGTGACCATTATATAAACAACAGCAGGGCCCTTCGTGAGGCCATGTGTTTTATGATGGATCCTACTCTTGGGAAGAAAGTCT

Fln Alignment:

Contig12559___SPQVDGDKEDECADNLDHDFNSTQGNRNEKQQIAEAMLHWQMAYGRGEDVGPSRSESQELPQLQVPLITNGQAISGELPAGSSEYHRIAAPPTGGGSGKRVHPLPFPDSTETGRVRVEDPAKDFNSYGFGNVAWKERVESWKNKQDKNTLQVTSDTYYASEGKDGDMDGCVADEEDLQMSDEARQPLSRKVPIASSKINPYRMVIVLRLVILCFFFRYRILNPVYNAYGLWFTSVICEIWFAISWILDQFPKWLPINRETYLDRLCLRYDREGEPSQLAAVDIFVSTVDPMKEPPLVTANTVLSILSVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFVKKFDIEPRAPEWYFAQKIDYLKDKVQPSFVKERRAMKREYEEFKVRINALVAKAQKVPEEGWIMQDGTPWPGNNTRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFEHHKKAGAMNSLVRVSAVLTNGPYMLNLDCDHYINNSRALREAMCFMMDPTLGKKV
Q4VWW7_______________SPQVDGDKEDECADDLDHDFNSTQGNRNEKQQIAEAMLHWQMAYGRGEDVGPSRSESQELPQLQVPLITNGQAISGELPAGSSEYRRIAAPPTGGGSGKRVHPLPFPDSTQTGQVRAEDPAKDFNSYGFGNVAWKERVESWKNKQDKNTLQVTSDTYYASEGKDGDIDGCVADEEDLQMSDEARQPLSRKVPIASSKINPYRMVIVLRLVILCFFFRYRILNPVRNAYGLWFTSVICEIWFAISWILDQFPKWLPINRETYLDRLCLRYDREGEPSQLAAVDIFVSTVDPMKEPPLVTANTVLSILSVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFVKKFDIEPRAPEWYFAQKIDYLKDKVQPSFVKERRAMKREYEEFKVRINALVAKAQKVPEEGWIMQDGTPWPGNNTRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFEHHKKAGAMNSLVRVSAVLTNGPYMLNLDCDHYINNSRALREAMCFMMDPTLGKKV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain