SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene12512

Length: 792 nt

Origin of reads: Biogeco1 v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene12512

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cholesterol transport protein n=1 Tax=Populus trichocarpa RepID=B9HPX9_POPTR	-	-	62%
FL-Next	tr=Cholesterol transport protein; subsp. trichocarpa).	-	-	62%
Blast2go	patched family protein	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	cholesterol transport	GO:0030301	Biological Process	81%
Blast2go	binding	GO:0005488	Molecular Function	81%
Blast2go	hedgehog receptor activity	GO:0008158	Molecular Function	81%
Blast2go	plasma membrane	GO:0005886	Cellular Component	81%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	81%
Blast2go	integral to membrane	GO:0016021	Cellular Component	81%
Blast2go	mitochondrion	GO:0005739	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Sma3	Sterol-sensing domain	IPR000731	-	-
Sma3	Chaperonin TCP-1, conserved site	IPR002194	-	-
Sma3	Patched	IPR003392	-	-
Sma3	Niemann-Pick C type protein	IPR004765	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain