SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene12485

Length: 998 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene12485

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RING/U-box domain-containing protein [Arabidopsis thaliana] ref\|NP_974832.1\| RING/U-box domain-containing protein [Arabidopsis thaliana] gb\|AAM97093.1\| RING finger-like protein [Arabidopsis thaliana] gb\|AAT47817.1\| At5g24870 [Arabidopsis thaliana] gb\|AED9	-	-	3.00004e-41	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	44%
Blast2go	zinc finger family protein	-	-	0.0	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	metal ion binding	GO:0046872	Molecular Function	0.0	65%

Source	InterPros	Term	Type	Identity
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Aspartate/ornithine carbamoyltransferase	IPR006130	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Hemopexin/matrixin, conserved site	IPR018486	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
132		33		66	1.0
158	14	85			0.993533
159	85			14	0.993533
160	85		14		0.993533
161	71		14	14	0.984337
289	12		87		0.992554
406		68		31	1.0
597	10			90	0.90298
600	90			10	0.90298
601	10		90		0.90298
604	10		90		0.90298
606			88	11	0.923564
608		11		88	0.923564
609	11			88	0.923564
615	87	12			0.992554
728	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain