SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene12477

Length: 392 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene12477
TGGTTAACAACTTGCACGGTAGAACTATCTACGCCGAGGACAGGTTGTCGTCGAGAATCGCGAGCTTACAAGAGGAATTAGCCGATCAGCCTATAGCGATAATCGCTAGGGGATTAGTGAAAGTTGGCGAGACGAATGGAGAAATCGACAAAGCACTTGATAAGCACGAGAAAGCCATGGCGATTCTTTTAGAGGAAGCCGATAAGTTAAGGATTGAGACACTTAAAGAATTGATGGGCATGTTGACGCCGTTACAGGTGGCGGATTTTCTCGTCGCCGGGAAGAAACTTCATCTCTCATTTCATAAATGGGGAATATCGAGGGATAGAAAACACGGAAGGAACGTTGAGGAGTAAATTAATTAATAATGGGTCGAACGTACGTACGGACTA

Ace file of the UniGene sp_v2.0_unigene12477

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Delay of germination 1 (Fragment) n=1 Tax=Brassica rapa subsp. pekinensis RepID=C8CJG9_BRARP	-	-	3.0e-25	51%
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	0.0	52%
Blast2go	dog1 alpha splice variant	-	-	1.69312e-35	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	sugar mediated signaling pathway	GO:0010182	Biological Process	1.69312e-35	75%
Blast2go	abscisic acid mediated signaling pathway	GO:0009738	Biological Process	1.69312e-35	75%
Blast2go	regulation of seed dormancy process	GO:2000033	Biological Process	1.69312e-35	75%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9THQ4

Fln msg: your sequence is shorter than subject: 118 - 255

Fln protein: VNNLHGRTIYAEDRLSSRIASLQEELADQPIAIIARGLVKVGETNGEIDKALDKHEKAMAILLEEADKLRIETLKELMGMLTPLQVADFLVAGKKLHLSFHKWGISRDRKHGRNVEE*

Protein Length: 119

Fln nts: TGGTTAACAACTTGCACGGTAGAACTATCTACGCCGAGGACAGGTTGTCGTCGAGAATCGCGAGCTTACAAGAGGAATTAGCCGATCAGCCTATAGCGATAATCGCTAGGGGATTAGTGAAAGTTGGCGAGACGAATGGAGAAATCGACAAAGCACTTGATAAGCACGAGAAAGCCATGGCGATTCTTTTAGAGGAAGCCGATAAGTTAAGGATTGAGACACTTAAAGAATTGATGGGCATGTTGACGCCGTTACAGGTGGCGGATTTTCTCGTCGCCGGGAAGAAACTTCATCTCTCATTTCATAAATGGGGAATATCGAGGGATAGAAAACACGGAAGGAACGTTGAGGAGTAA___ATTAATTAATAATGGGTCGAACGTACGTACGGACTA

Fln Alignment:

Contig12477___VNNLHGRTIYAEDRLSSRIASLQEELADQPIAIIARGLVKVGETNGEIDKALDKHEKAMAILLEEADKLRIETLKELMGMLTPLQVADFLVAGKKLHLSFHKWGISRDRKHGR
B9THQ4_______________VNVLHCKTIKHEEKLTTQLASLQEDIADEPISMVAKEQSHAGDSNEVVDRALQNHDEAMVRLLQEADNLRLTTLKELISILTPVQAVDYLAAGRKLHLCMHEWGKKRDLKHGR

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
3			83	16	0.994512

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain