SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene12476

Length: 1099 nt

Origin of reads: Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene12476

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative LRR receptor-like serine/threonine-protein kinase [Arabidopsis thaliana] sp\|C0LGV0.1\|Y5487_ARATH RecName: Full=Probable LRR receptor-like serine/threonine-protein kinase At5g48740; Flags: Precursor gb\|ACN59385.1\| leucine-rich repeat receptor-like	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	50%
Blast2go	lrr receptor-like serine threonine-protein kinase	-	-	68%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	68%

Source	GOs	Term	Type	Identity
Blast2go	phosphorylation	GO:0016310	Biological Process	68%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	68%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	68%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	S-locus glycoprotein	IPR000858	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	Actinin-type, actin-binding, conserved site	IPR001589	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Opsin	IPR001760	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	Peptidase S16, lon N-terminal	IPR003111	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Apple-like	IPR003609	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	PAN-2 domain	IPR013227	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Heat shock protein 70, conserved site	IPR018181	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PRI9

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 253 aas, your sequence is shorter than subject: 365 - 656

Fln protein: *VSI*SQCPSRVVSRP*WLHGTNAKFGQFIPIGAIKFIKQ*LEWQS*VASFTNTSSRSVSQS*SIHWTSAKFGLSIQFGATIFTKQ*TEW*Y*VVVAF*FTKSSRIKYSKQ*FQRCIS*SPAP*LFVETQLLGKSLPTDG*EGM*SRQEKQERKQ**SQERKRVMLVVLGILFIALMVDKFVKLRIKFYSTESKHFLNQDRFMNMVSKARAFTLDEMIAATQNFRREIGRGGFGSVFFGKLPEGKIIAVKVLSLFSRQGIQEFLNEVDLLSKINHRNLVSLLGYCNKTEQVMLIYEHMSGGSLRDHLYGPRAENSYLNWKRRLKIALDAAQGLEYLHVGCTPKIIHRDIKTANILLDSNLNGKLA

Protein Length: 366

Fln nts: CCTGAGTTTCTATCTAATCTCAGTGCCCTTCAAGAGTTGTCTCTCGACCATAATGGCTTCACGGGACCAATGCCAAATTTGGACAATTTATACCAATTGGAGCGATTAAATTTATCAAACAATAACTTGAATGGCAGTCTTGAGTGGCTAGCTTCACTAATACATCTTCAAGAAGTGTCTCTCAATCATAATCAATTCACTGGACTAGTGCCAAATTTGGCCTATCTATCCAATTTGGAGCGACTATATTTACAAAACAATAAACTGAATGGTAATATTGAGTGGTGGTGGCTTTCTGATTTACAAAATCTTCAAGAATTAAATATAGCAAACAATAATTTCAGCGGTGTATTTCCTGATCGCCTGCTCCTTAATTGTTCGTTGAAACTCAATTACTCGGGAAATCCCTACCTACGGATGGGTAAGAGGGAATGTAATCTCGACAAGAAAAACAAGAAAGAAAACAGTGATAATCACAAGAAAGAAAACGTGTGATGTTGGTTGTCCTGGGAATTCTATTCATCGCGTTGATGGTAGATAAATTTGTAAAATTGAGAATAAAATTCTATTCTACTGAAAGCAAACATTTCTTGAACCAAGACCGCTTCATGAATATGGTGTCAAAAGCACGTGCCTTCACTCTAGATGAGATGATAGCTGCCACACAAAATTTTAGAAGGGAAATCGGACGAGGGGGATTTGGTTCGGTGTTCTTTGGCAAATTGCCCGAAGGAAAAATTATAGCTGTGAAAGTGCTATCCTTGTTCTCCCGACAAGGAATTCAAGAGTTTTTGAACGAGGTTGATCTTCTTTCTAAAATAAACCATAGGAACTTGGTATCTCTATTGGGCTACTGTAACAAAACCGAACAAGTTATGCTGATCTACGAACACATGTCAGGAGGATCCCTACGAGACCACCTTTATGGTCCTCGTGCAGAAAATTCATATCTAAATTGGAAAAGAAGGCTCAAAATAGCTTTAGATGCAGCACAGGGTTTGGAATACCTGCACGTGGGTTGCACCCCAAAAATAATTCACAGGGACATCAAGACGGCCAACATACTTTTGGATAGCAATTTGAATGGGAAGTTGGCCGA

Fln Alignment:

Contig12476___ARAFTLDEMIAATQNFRRE--IGRGGFGSVFFGKLPEGKIIAVKVLSLFSRQGIQEFLNEVDLLSKINHRNLVSLLGYCNKTEQVMLIYEHMSGGSLRDHLYGPRAENSYLNWKRRLKIALDAAQGLEYLHVGCTPKIIHRDIKTANILLDSNLNGKLA
C0PRI9_______________SRTFTYEDLEAATNGFSRTNLLGQGGFGYVYKGILPGSKTIAVKQLKVGGSQGEREFQAEVEIISRVHHRHLVSLVGYCIAGSQRLLVYEFVPNDTLEHHLHGKGQPN--MEWPTRLKIAIGAARGLAYLHEDCYPKIIHRDIKASNILLDSNFEAKVA

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
246	80		20		0.995493
249	20			80	0.995493
250	20			80	0.995493
255	80			20	0.995493
256	80			20	0.995493
257	80			20	0.995493
258	80			20	0.995493
259	20	80			0.995493
855		75		25	0.996473
881	75		25		0.996473
952	25		75		0.996473
953	75			25	0.996473
954	75		25		0.996473
955	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain