SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene12400

Length: 828 nt

Origin of reads: Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene12400

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ribosomal protein L16a [Coprinopsis cinerea okayama7#130] gb\|EAU93058.1\| ribosomal protein L16a [Coprinopsis cinerea okayama7#130]	-	-	91%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	57%
Blast2go	60s ribosomal protein l13a	-	-	87%

Source	GOs	Term	Type	Identity
Blast2go	translation	GO:0006412	Biological Process	87%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	87%
Blast2go	large ribosomal subunit	GO:0015934	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Sma3	Ribonuclease H domain	IPR002156	-	-
Sma3	Ribosomal protein L13, eukaryotic/archaeal	IPR005755	-	-
Sma3	Ribosomal protein L13	IPR005822	-	-

Full-Lengther Next Prediction

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
178	33		66		0.997452
179		66		33	0.997452
181	66			33	0.997452
182		66		33	0.997452
183	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain