SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene12310

Length: 596 nt

Origin of reads: Biogeco3 v1

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene12310

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ubiquitin carboxyl-terminal hydrolase-like protein [Arabidopsis thaliana] gb\|ABK28304.1\| unknown [Arabidopsis thaliana] gb\|AEE81971.1\| ubiquitin carboxyl-terminal hydrolase-like protein [Arabidopsis thaliana]	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	69%
Blast2go	protein	-	-	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	0.0	80%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1	IPR001578	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-

Full-Lengther Next Prediction

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
237	12	75	12		0.975346
238	12	12		75	0.975346
239		75		25	1.0
242	87	12			0.992554
244	87	12			0.992554
245	85			14	0.993533
247	14		85		0.993533
271		14	85		0.993533
274	85			14	0.993533
348	83			16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain