SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene12309

Length: 2839 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene12309
TATTCCAAAACAAATCTTAACGGAAGATTCACATTGTCAGGATGATGCTGTATCAGAAGAAAGACAGTTGAAATTGGAGCAATCATGTCAAGGAGGTTATGAACAAGCACAATCCTCTTCCCAGCAGTCCTCAATATTGCTGCAGGAAGCCCGTTTGCCACCAGCTCATCGTCCACGATTCAGCATGGGTTCATCGCTGTATACTGCCAGTGCTATAGCTTTATCAATGCAGGTTTCAAGCTCAAAGTCTCCGAATGGAAGCTCAAAATCAAGCCCAGGGGCAGCTCATTTGCATAAGAATTCAGTTGGGGGTGTTGGTAAAACATCTGGCTCAAGCTGTGTATCAAGACCACCTGCATCTGGGCCCATTGCTGAGGTAACAGTAAATCATCTGGTCAAGGAACGAAGTCATCAGTATGTACAGTGTCATTTTCACTGGCCAGCAAGCCAATTCATCACTCAAAGCAGCGCATTAGATCAGTAATTCCACAGAAATCATGAAAGATGATGCTGGGAATGCTGTTGGTAAAGGGTCAAGCACAGGGAGCCCTGGCCGTGTTTCTCCAGAGATATCATCATCAAAATCTGTTCCGAAGGATAATGTTAAATGCTTGACAAATTCTACAGGAAAAACAGCACCACTTGGAAAATCAAGCTTCCCAGGTGGAACATCAAAGCAGTCTGCTTCCAGTCCAAAGGGACACAGTTTGTGTCCATCTTCAAAGTCATCTGCAGGACAGAATGTACCTAATTATTCTAGTTCTATGGAGCATGTTGTCGCAACGCATCAGCATACCTTATCAACACAGACAAAGCATGTTGCTATAGGGACAGCTCACAAAACTGAAAAGTCAAGTTTACTTGCTGCTCAATCAGTAGTGAAAGCTGCTACTACTTTGCCATCTGCACCCCCTTCAGTTTCAAACAGTGCCCCTACAACCCTAAGTGATGAAGCGCTTGCCTTATTGTTGCATCAGCAGCTCAACAGTTCTCCAAGAGTTCCTCGAGTACCACGTGTGCGACAGGCTGGCAATATTCCTCAGTTGGCATCTTCCACAGCACCACCTTCAGGCACCCTTGTTAAGAGACCAACTGCAGTCACCTCACAGTGTAATTCTGTCAGTGGACAGAAGGAACATAATTCGGTTTCAAGGAGAAGAAACAGAGAAGACAATGCTAGAGAGTCGTCCCGAACTGTTCATGGAATTGAAGAGCTTGTAAACCCTGAGGGACTGTTGTCATCACCCGATACAAAGAGGCAAGAGGAGAGCAACAGGAGTGATGATCTTTCATACTCAACTAGAAGGGAAACACCTTCTAGATCATCAGATGTCTCATGTACTGCTAATAAAAATGTAGCTTCAACTAGTGTGCATAATATGACTGAAGGCAGTAGTCATTGCATTGCATTTGATTCAATCGATGGGCACTTGTCTAGTGTTCATGTCTCTCCTGGTGATATGTCTGATGATGCAGAAAATACATCTATGGGAGGTGGTGCACCGACGTTGCCCAGCTTAATTGATGAATTACTCAGCAAAAATCAGCATATGTCATATGATGAACTGTGTGAGGCTGTTCTACCGCACTGGCAGAATCTCAGGAAACATAATGGCGAGAGATATGCCTATACAAGCCATTGCCAGGCTGTTCTGGATTGTCTAAGGAATCGCACAGTATGGGCTCATCTTGTTGATCGTGGACCAAAGACAGGCGTGGGTAGGAAGAGACGAAGAATTGATGCAGCTGTGGCTGTAGACTCTGAAGACGATGAAGAAGCTGATGGCTTAGGTTCTCATGAAGATGAGCGACACACTGGTAGGTTAAGCAAGTTGAATGATGTGGCTAGTGAGAGATCTGATTCATTGGCTTCTGATAGACAAAAGGATGTTGACATTACTGTTATAGAGGATGTTCCCAAGGGTAAGCGCAATTCTCGAAGGCGAAGACCGTTGGAATTTAAAAGCAGAGAAGATATGGACGAGTTCAAGAGATCAACCAGGAAGGACAAAAAAAGGTACAAAACTGAGGGTTTGGTTCGAACACCCCAACGAGAAGAACATGAACCATTTTCTGTTTCAAGTGAGGACACAAGCAGCAATGACAGTGAGGATGATAATCGCACTGCGCCCCATTCTGTTAGGATGCATTTGGCAAGCAGTGAGACAAGTGCTGATGAATTATAATAGACTCCATGATATGGGAGGTTTAAAAAAACTTGGGAACATGTTTGCAGGGTGGTTGGTTGCTGCAGGAATGTAATGGCACATAGAAGGCTGAAACTCATCTTTGGGTTCTAATGTTATTTTTCTTGGTGCTAATGAGAATTGCTCAAGAAAATTGTTGTGTACTTTATTGTAACAAATTTAGTTTGGTTTGTGCCATTTCTTCGAGGAAGATCTGGGCACAGCTTAAGATTCATCTTGTTCTATCTGGAAAGTCCCGATTTAAAATTCACTTTTATATCATTTGATAGATCAACAAAATGTACAAGCCGTCACGTTTCAGTACAAGATTGTGCTGATGTTACGAGTCATGAAATTCTTTGAAAATCTCCCTTTGTAATATATGTAAATTGTTTTTGTCCACTTCCAGTCATTGGCATCTGTTTTGTGCACCTCTTAGAGAAAAATGGACTACGTGCCATGCACCGGACATGAATATGTAGCTGTTATCTCTTTTGAGCACCTCTTAAAGAAAAATGGATTACATGACATGCACGGGATGGGGCATGAACGTGTAGCTGTCAAGATTTGGTGCCAGACTGTTGATATTACTAGTCATAAAACACTCGGGAATCCATTTGTTTGTAATTACATGCAATTATTTTTGGCTACTT

Ace file of the UniGene sp_v2.0_unigene12309

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RING/FYVE/PHD zinc finger protein [Arabidopsis thaliana] gb\|AAF31272.1\|AC006424_1 Location of EST 206I21T7, gb\|N37185 [Arabidopsis thaliana] gb\|AEE31531.1\| RING/FYVE/PHD zinc finger protein [Arabidopsis thaliana]	-	-	4.99983e-42	29%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	37%
Blast2go	proteophosphoglycan ppg4	-	-	0.0	47%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: F6HU84

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 728 - 1177

Fln protein: FQNKS*RKIHIVRMMLYQKKDS*NWSNHVKEVMNKHNPLPSSPQYCCRKPVCHQLIVHDSAWVHRCILPVL*LYQCRFQAQSLRMEAQNQAQGQLICIRIQLGVLVKHLAQAVYQDHLHLGPLLR*Q*IIWSRNEVISMYSVIFTGQQANSSLKAAH*ISNSTEIMKDDAGNAVGKGSSTGSPGRVSPEISSSKSVPKDNVKCLTNSTGKTAPLGKSSFPGGTSKQSASSPKGHSLCPSSKSSAGQNVPNYSSSMEHVVATHQHTLSTQTKHVAIGTAHKTEKSSLLAAQSVVKAATTLPSAPPSVSNSAPTTLSDEALALLLHQQLNSSPRVPRVPRVRQAGNIPQLASSTAPPSGTLVKRPTAVTSQCNSVSGQKEHNSVSRRRNREDNARESSRTVHGIEELVNPEGLLSSPDTKRQEESNRSDDLSYSTRRETPSRSSDVSCTANKNVASTSVHNMTEGSSHCIAFDSIDGHLSSVHVSPGDMSDDAENTSMGGGAPTLPSLIDELLSKNQHMSYDELCEAVLPHWQNLRKHNGERYAYTSHCQAVLDCLRNRTVWAHLVDRGPKTGVGRKRRRIDAAVAVDSEDDEEADGLGSHEDERHTGRLSKLNDVASERSDSLASDRQKDVDITVIEDVPKGKRNSRRRRPLEFKSREDMDEFKRSTRKDKKRYKTEGLVRTPQREEHEPFSVSSEDTSSNDSEDDNRTAPHSVRMHLASSETSADEL*

Protein Length: 729

Fln nts: TATTCCAAAACAAATCTTAACGGAAGATTCACATTGTCAGGATGATGCTGTATCAGAAGAAAGACAGTTGAAATTGGAGCAATCATGTCAAGGAGGTTATGAACAAGCACAATCCTCTTCCCAGCAGTCCTCAATATTGCTGCAGGAAGCCCGTTTGCCACCAGCTCATCGTCCACGATTCAGCATGGGTTCATCGCTGTATACTGCCAGTGCTATAGCTTTATCAATGCAGGTTTCAAGCTCAAAGTCTCCGAATGGAAGCTCAAAATCAAGCCCAGGGGCAGCTCATTTGCATAAGAATTCAGTTGGGGGTGTTGGTAAAACATCTGGCTCAAGCTGTGTATCAAGACCACCTGCATCTGGGCCCATTGCTGAGGTAACAGTAAATCATCTGGTCAAGGAACGAAGTCATCAGTATGTACAGTGTCATTTTCACTGGCCAGCAAGCCAATTCATCACTCAAAGCAGCGCATTAGATCAGTAATTCCACAGAAATCATGAAAGATGATGCTGGGAATGCTGTTGGTAAAGGGTCAAGCACAGGGAGCCCTGGCCGTGTTTCTCCAGAGATATCATCATCAAAATCTGTTCCGAAGGATAATGTTAAATGCTTGACAAATTCTACAGGAAAAACAGCACCACTTGGAAAATCAAGCTTCCCAGGTGGAACATCAAAGCAGTCTGCTTCCAGTCCAAAGGGACACAGTTTGTGTCCATCTTCAAAGTCATCTGCAGGACAGAATGTACCTAATTATTCTAGTTCTATGGAGCATGTTGTCGCAACGCATCAGCATACCTTATCAACACAGACAAAGCATGTTGCTATAGGGACAGCTCACAAAACTGAAAAGTCAAGTTTACTTGCTGCTCAATCAGTAGTGAAAGCTGCTACTACTTTGCCATCTGCACCCCCTTCAGTTTCAAACAGTGCCCCTACAACCCTAAGTGATGAAGCGCTTGCCTTATTGTTGCATCAGCAGCTCAACAGTTCTCCAAGAGTTCCTCGAGTACCACGTGTGCGACAGGCTGGCAATATTCCTCAGTTGGCATCTTCCACAGCACCACCTTCAGGCACCCTTGTTAAGAGACCAACTGCAGTCACCTCACAGTGTAATTCTGTCAGTGGACAGAAGGAACATAATTCGGTTTCAAGGAGAAGAAACAGAGAAGACAATGCTAGAGAGTCGTCCCGAACTGTTCATGGAATTGAAGAGCTTGTAAACCCTGAGGGACTGTTGTCATCACCCGATACAAAGAGGCAAGAGGAGAGCAACAGGAGTGATGATCTTTCATACTCAACTAGAAGGGAAACACCTTCTAGATCATCAGATGTCTCATGTACTGCTAATAAAAATGTAGCTTCAACTAGTGTGCATAATATGACTGAAGGCAGTAGTCATTGCATTGCATTTGATTCAATCGATGGGCACTTGTCTAGTGTTCATGTCTCTCCTGGTGATATGTCTGATGATGCAGAAAATACATCTATGGGAGGTGGTGCACCGACGTTGCCCAGCTTAATTGATGAATTACTCAGCAAAAATCAGCATATGTCATATGATGAACTGTGTGAGGCTGTTCTACCGCACTGGCAGAATCTCAGGAAACATAATGGCGAGAGATATGCCTATACAAGCCATTGCCAGGCTGTTCTGGATTGTCTAAGGAATCGCACAGTATGGGCTCATCTTGTTGATCGTGGACCAAAGACAGGCGTGGGTAGGAAGAGACGAAGAATTGATGCAGCTGTGGCTGTAGACTCTGAAGACGATGAAGAAGCTGATGGCTTAGGTTCTCATGAAGATGAGCGACACACTGGTAGGTTAAGCAAGTTGAATGATGTGGCTAGTGAGAGATCTGATTCATTGGCTTCTGATAGACAAAAGGATGTTGACATTACTGTTATAGAGGATGTTCCCAAGGGTAAGCGCAATTCTCGAAGGCGAAGACCGTTGGAATTTAAAAGCAGAGAAGATATGGACGAGTTCAAGAGATCAACCAGGAAGGACAAAAAAAGGTACAAAACTGAGGGTTTGGTTCGAACACCCCAACGAGAAGAACATGAACCATTTTCTGTTTCAAGTGAGGACACAAGCAGCAATGACAGTGAGGATGATAATCGCACTGCGCCCCATTCTGTTAGGATGCATTTGGCAAGCAGTGAGACAAGTGCTGATGAATTATAA___TAGACTCCATGATATGGGAGGTTTAAAAAAACTTGGGAACATGTTTGCAGGGTGGTTGGTTGCTGCAGGAATGTAATGGCACATAGAAGGCTGAAACTCATCTTTGGGTTCTAATGTTATTTTTCTTGGTGCTAATGAGAATTGCTCAAGAAAATTGTTGTGTACTTTATTGTAACAAATTTAGTTTGGTTTGTGCCATTTCTTCGAGGAAGATCTGGGCACAGCTTAAGATTCATCTTGTTCTATCTGGAAAGTCCCGATTTAAAATTCACTTTTATATCATTTGATAGATCAACAAAATGTACAAGCCGTCACGTTTCAGTACAAGATTGTGCTGATGTTACGAGTCATGAAATTCTTTGAAAATCTCCCTTTGTAATATATGTAAATTGTTTTTGTCCACTTCCAGTCATTGGCATCTGTTTTGTGCACCTCTTAGAGAAAAATGGACTACGTGCCATGCACCGGACATGAATATGTAGCTGTTATCTCTTTTGAGCACCTCTTAAAGAAAAATGGATTACATGACATGCACGGGATGGGGCATGAACGTGTAGCTGTCAAGATTTGGTGCCAGACTGTTGATATTACTAGTCATAAAACACTCGGGAATCCATTTGTTTGTAATTACATGCAATTATTTTTGGCTACTT

Fln Alignment:

Contig12309___ISN-STEIMKDDAGNAVGKGSSTGSPGRVS----PEISSSKSVPKDNVKCLTNSTGKTAPLGKSSFPGGTSKQSASSPKGHSLCPSSKSSAGQN--VPNYSSSMEHVVATHQHTLSTQTKHVAIGTAHKTEKSSLLAAQSVVKAATTLXXXXXXXXXXXXTTLSDEALALLLHQQLNSSXXXXXXXXXXQAGNIPQLASSTAPPSGTLVKRPTAVTSQCNSVSGQKEHNSVSRRRNREDNARESSRTVHGIEELVNPEGLLSSPDTKRQEESNRSDDLSYSTRRETPSRSSDVSCTANKNVASTSVHNMTEGSSHCIAFDSIDGHLSSVHVSPGDMSDDAENTSMGGGAPTLPSLIDELLSKNQHMSYDELCEAVLPHWQNLRKHNGERYAYTSHCQAVLDCLRNRTVWAHLVDRGPKTGVGRKRRRIXXXXXXXXXXXXXXXGLGSHEDERHTGRLSKLNDVASERSDSLASDRQKDVDITVIEDVPKGKRNSRRRRPLEFKSREDMDEFKR
F6HU84_______________VSNCNTNSKKDHAASDVVRDEDRHEMPRKTVKERPKSSINPALKASHSNRISHSSVSKRPLSDS--------KDSKDPVLHS---SSKASSAQNTAVPSGSGDSAGSLQT-QSAVLVQNKVPAPSLSQRGEKFSTSNSQSSSKV-NNMSSMHPTAPSNSPATLSDEELALLLHQELNSSPRVPRVPRVRHAGSLPQLTSPT--PTSMLIKR--------TSSSGGKDHGLIPRRKSK-DISKDGSRGFRERDDEAKKMDRVPSPDQRRHDPVHAADA---STKREADDGFPKAEHSVKKNIPLAS--NTTANSGPSSSNEVNDQNLASVRNSPRNMSDDDAGTVRVPAHRTLPGLINDIMSKGRRMTYEELCNAVLPHWHNLRKHNGERYAYSSHSQAVLDCLRNRNEWARLIDRGPKTNASRKRRKL----------DAEPSSFELDDNEYGKGKMAK-----EVESKSLESHR---------EEFPKGKRKARRRR-LALQGRGIKDVRKR

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
429		33		66	0.997452
640	33	66			0.997452
687	33		66		0.997452
714	25			75	0.996473
715	25			75	0.996473
792	44		55		1.0
1553	66		33		0.997452
1554			66	33	0.997452
1719	85		14		0.993533
1787	50	50			1.0
1855	60			40	1.0
1865	16			16	0.988813
1866		83		16	0.994512
1869	83		16		0.994512
1876			83	16	0.994512
1877	16		66	16	0.988813
1879	20			20	0.99255
1882		75	25		0.996473
1884			75	25	0.996473
2400	12			87	0.992554
2402		87	12		0.992554
2404	87		12		0.992554
2409		20	80		0.999996
2410	80		20		0.999996
2414			80	20	0.999996
2415	20		80		0.999996
2416		20	80		0.999996
2418	80			20	0.999996
2419		80		20	0.999996
2420	80		20		0.999996
2425	80	20			0.999996
2428	80	20			0.999996
2430		20		80	0.999996
2431	20	80			0.999996
2625	50			50	1.0
2636	50		50		1.0
2651	16	83			0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain