SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene12308

Length: 524 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene12308
GGACAGACTGCAACGGACATATGTCCAGGGATCAAATATAGGGCCGCTGCCTGATCATTAAAAGAAAGTAGTCATGACAATAAGCAATGATTTTGGACAGGATGAATTACATAACATTCGGATTAAAAAACAGAATAAACAAGGAGCATACATAGTTTGTTGGCTTTTGGGAATTGGATGCCTTTTCCCCTGGAATAGTATGCTGACAATTGAAGATTACTATGTACCTTTATTCCCGACATACCACTCTTCAAGAGTGTTGACTCTAGTATACCAGCCATTCGCACTGGTAACTATGTGTATACTATCATACTATGAAGCTACTGTCAACACAAGAAGCCGGATTCTATGGGGATATGTACTTTTTAGCCTAAGCACACTCCTTGTTCTCGTTTTGGACCTTGCAACATCCGGAAAGGGAGGACTGGGAACTTTCATTGGCGTATGTATAATAAGTGCAGCTTTTGGTATTGCTGATGCTCATGTTCAGGGAGGAATGTTTGGGAGTATTTATCGTACATGCT

Ace file of the UniGene sp_v2.0_unigene12308

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative nucleoside transporter, ENT2 [Arabidopsis thaliana] gb\|AAF04424.1\|AC010927_17 hypothetical protein [Arabidopsis thaliana] gb\|AEE74845.1\| putative nucleoside transporter, ENT2 [Arabidopsis thaliana]	-	-	2.0e-33	52%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	68%
Blast2go	equilibrative nucleoside transporter	-	-	0.0	78%

Source	GOs	Term	Type	Identity
Blast2go	nucleoside transport	GO:0015858	Biological Process	78%
Blast2go	nucleoside transmembrane transporter activity	GO:0005337	Molecular Function	78%
Blast2go	membrane	GO:0016020	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	Ribonuclease H domain	IPR002156	-	-
Sma3	Equilibrative nucleoside transporter	IPR002259	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: D7SQS6

Fln msg: Distance to subject end: 271 aas, your sequence is shorter than subject: 150 - 417

Fln protein: MTISNDFGQDELHNIRIKKQNKQGAYIVCWLLGIGCLFPWNSMLTIEDYYVPLFPTYHSSRVLTLVYQPFALVTMCILSYYEATVNTRSRILWGYVLFSLSTLLVLVLDLATSGKGGLGTFIGVCIISAAFGIADAHVQGGMFGSIYRTC

Protein Length: 151

Fln nts: GGACAGACTGCAACGGACATATGTCCAGGGATCAAATATAGGGCCGCTGCCTGATCATTAAAAGAAAGTAGTC_-_ATGACAATAAGCAATGATTTTGGACAGGATGAATTACATAACATTCGGATTAAAAAACAGAATAAACAAGGAGCATACATAGTTTGTTGGCTTTTGGGAATTGGATGCCTTTTCCCCTGGAATAGTATGCTGACAATTGAAGATTACTATGTACCTTTATTCCCGACATACCACTCTTCAAGAGTGTTGACTCTAGTATACCAGCCATTCGCACTGGTAACTATGTGTATACTATCATACTATGAAGCTACTGTCAACACAAGAAGCCGGATTCTATGGGGATATGTACTTTTTAGCCTAAGCACACTCCTTGTTCTCGTTTTGGACCTTGCAACATCCGGAAAGGGAGGACTGGGAACTTTCATTGGCGTATGTATAATAAGTGCAGCTTTTGGTATTGCTGATGCTCATGTTCAGGGAGGAATGTTTGGGAGTATTTATCGTACATGCT

Fln Alignment:

Contig12308___MTISNDFGQDELHNIRIKKQNKQGAYIVCWLLGIGCLFPWNSMLTIEDYYVPLFPTYHSSRVLTLVYQPFALVTMCILSYYEATVNTRSRILWGYXXXXXXXXXXXXXXXXXXGKGGLGTFIGVCIISAAFGIADAHVQGGMFGSI
D7SQS6_______________MSVHNENG----NGAPTKVEGKYAAIIVCWLLGNGCLFSWNSMLTIGDYYAYLFPDYHPSRVLTLVYQPFALVTIAILTYKEAKINTRLRNLFGYTLFFISTLLVLVLDLATSGKGGLGTFIGICVLSAAFGLADAHVQGGMVGDL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain