SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene12304

Length: 806 nt

Origin of reads: Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene12304

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cytochrome P450 704C1 n=1 Tax=Pinus taeda RepID=C04C1_PINTA	-	-	52%
FL-Next	sp=Cytochrome P450 704C1; Pinus taeda (Loblolly pine).	-	-	52%
Blast2go	cytochrome p450	-	-	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	metal ion binding	GO:0046872	Molecular Function	0.0	66%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	0.0	66%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1 complex, OSCP/delta subunit	IPR000711	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q50EK3

Fln msg: Distance to subject end: 88 aas, your sequence is shorter than subject: 268 - 518

Fln protein: LEVYQTKQSTVEMQRLFLRSTIDGISKFVFGLEVNSLSMDESGPGATFSKAFDTANGLLFARHFDPIWKLKRYFNVGSEVIVKECIKIVDDFVYDVIRNRRHEISLQTINMKPDLLSRFMEVTDSNQGDYSANDKYLRDIIINFIIAGRDTTATTLSWFFHMLSKSPDVEKKILREICELVKEKERVPLEETVTRFCESLTHTALDKMHYLHAALSEALRLYPPIAQDGKVAVADDILPDGYKINKGDILVYVPYSMGRMKYLWGTDA

Protein Length: 269

Fln nts: CTTGAAGTCTATCAAACTAAGCAAAGCACTGTAGAAATGCAGCGTCTATTTCTGAGATCAACCATCGATGGAATATCCAAGTTCGTTTTTGGACTAGAAGTCAATAGCTTATCCATGGATGAGTCTGGACCGGGGGCAACTTTTTCAAAGGCTTTTGATACTGCAAATGGTTTGCTTTTCGCGCGTCATTTTGACCCTATCTGGAAATTAAAAAGGTACTTCAACGTAGGATCGGAGGTCATCGTAAAGGAATGCATCAAAATCGTGGATGACTTTGTGTACGACGTCATTCGGAATAGAAGACATGAGATTTCACTGCAAACTATTAATATGAAACCAGATTTGCTGTCTCGATTTATGGAAGTAACTGACAGTAACCAAGGCGATTACTCTGCGAACGATAAGTATCTACGAGATATTATTATTAACTTCATTATTGCTGGGCGGGATACCACTGCGACTACTCTTTCTTGGTTCTTCCATATGCTTTCGAAGAGTCCAGACGTTGAAAAAAAGATTCTTCGAGAAATCTGTGAGCTGGTCAAGGAGAAAGAACGTGTGCCCCTGGAAGAAACTGTAACTAGGTTTTGTGAAAGTCTAACACATACAGCCTTGGACAAGATGCATTATCTTCATGCAGCTTTATCGGAGGCTTTGCGTCTCTATCCCCCGATTGCACAGGATGGAAAGGTTGCAGTTGCTGATGATATCCTTCCAGATGGATACAAAATAAATAAAGGTGATATCCTGGTCTATGTACCTTACTCTATGGGAAGAATGAAATATCTCTGGGGAACTGATGCTGA

Fln Alignment:

Contig12304___TVEMQRLFLRSTIDGISKFVFGLEVNSLSMD--ESGPGATFSKAFDTANGLLFARHF-DPIWKLKRYFNVGSEVIVKECIKIVDDFVYDVIRNRRHEI-SLQTINMKPDLLSRFMEVTDSNQGDYSANDKYLRDIIINFIIAGRDTTATTLSWFFHMLSKSPDVEKKILREICELVKEKERVPLEET--VTRFCESLTHTALDKMHYLHAALSEALRLYPPIAQDGKVAVADDILPDGYKINKGDILVYVPYSMGRMKYLWGTDA
Q50EK3_______________SVEMQDLFMRSSLDSICKVVFGIDINSLSSSKAESGPEASFAKAFDVANAMVFHRHMVGSFWKVQRFFNVGSEAILRDNIKMVDDFLYKVIHFRRQEMFSAEKENVRPDILSRYIIISDK-ETDGKVSDKYLRDVILNFMVAARDTTAIALSWFIYMLCKHQHVQEKLLEEIISSTSVHEDQYSTECNDIASFAQSLTDEALGKMHYLHASLSETLRLYPALPVDGKYVVNEDTLPDGFKVKKGDSVNFLPYAMGRMSYLWGDDA

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
250		16	83		0.994512
251	83		16		0.994512
273		66		33	1.0
315	83		16		0.994512
461		33		66	0.997452
484	33			66	0.997452
556		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain