SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene12300

Length: 1685 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene12300

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	EamA-like transporter family protein [Arabidopsis thaliana] emb\|CAA16575.1\| putative protein [Arabidopsis thaliana] emb\|CAB79932.1\| putative protein [Arabidopsis thaliana] gb\|AAL09778.1\| AT4g32140/F10N7_50 [Arabidopsis thaliana] gb\|AAM47365.1\| AT4g32140/F	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	63%
Blast2go	uncharacterized vacuolar membrane protein yml018c-like	-	-	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	membrane	GO:0016020	Cellular Component	0.0	75%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	0.0	75%

Source	InterPros	Term	Type	e value	Identity
Sma3	Drug/metabolite transporter	IPR000620	-	0.0	-
Sma3	WD40 repeat, conserved site	IPR019775	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D7SV31

Fln msg: Separated hits, possible frame ERROR between 1379 and 1465, your sequence is longer than subject: 430 - 396

Fln protein: MGWRYNAGLLLIATVVFIWVTSAEVTQGIFSAYKQPFALTYLGVSLMVVYLPISFVKDWICSVIRKHCENYQTDAIVDTSCYLDSLLKVVMMDEGSETGMQHCLSRKDNDNSLHAEEEGRPLLMNYSNDSGDLRHQTELTSWEVVKYSFCISPIWFASEYLSNAASARTRLASTTVLSSTSGIFTLFFGALFGEDSLDIARVVSVFVTMAGVAMTTLGKTWAADESELSTSSSGQHSIIGDIFGLLSAVSYGIFTVLLKKLAGAEGEKVDVQKFFGYIGLFSLVTLWWLVWPLTAIGIEPKFSIPDSEKVDEVVIANGFVGSVLSDYFxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxALSVVWTTPLVATLGMSLTIPLAMIADMVIHGRHYSAIYFLGSAQVFAGFVIANLSDRCSRKTSLLHNGLI*

Protein Length: 431

Fln nts: AATGTAACTCTCTATCCATCCTCCCAATGTCGACAATTTCGGCATTAAAATTACACAGGAATCTCATTCACCTTGTATATTATACATTGTATAAGCCCCCAGTTAACTCAGTTGTTAGATAATGTAGTCCTCAACAAAATGTGAAAGGCCAATTTCATGTTGGGTGCACAATTTGGACGTCTGAAATGCTGAAAAAATGCTTACGATAATCAAAATGGCCGTTTTTAGTGTCAGGTGGTAAAGGAACTGAAGCTCTGCAGTACTCAAAAGTCGAAACAGTGGAGAATTTACTGAAATGGACTTAGAAATGAGACATCCACAAGAGTGATTGCCCTTATTAAGGGCTTGGTGGTTCCGGGTGCCCTTGGGAAATTATAGACCTGCGTTACAAG_-_ATGGGGTGGCGGTACAACGCTGGATTGCTTCTCATTGCTACGGTTGTTTTCATATGGGTTACATCTGCAGAAGTCACTCAGGGTATCTTTTCAGCCTACAAGCAACCATTTGCACTTACATATTTGGGAGTGTCTCTTATGGTCGTTTACCTGCCAATATCATTTGTAAAGGATTGGATCTGCAGTGTTATAAGAAAGCATTGTGAGAATTACCAGACAGATGCCATAGTTGACACCTCTTGTTACCTTGATTCTCTTCTGAAGGTAGTTATGATGGATGAAGGTTCAGAGACTGGGATGCAACATTGCCTATCAAGAAAAGATAATGATAATAGCCTTCATGCAGAAGAGGAAGGAAGACCACTACTCATGAATTACAGTAATGATTCAGGAGATTTGAGGCATCAAACAGAGCTCACATCATGGGAAGTTGTAAAATATAGTTTCTGTATATCACCAATTTGGTTTGCTTCAGAGTACCTATCAAATGCTGCCTCGGCACGAACAAGGCTAGCAAGCACAACAGTACTGTCTTCAACATCAGGAATTTTTACACTCTTTTTTGGGGCACTCTTTGGAGAAGATTCCCTTGACATTGCAAGAGTTGTATCAGTCTTTGTCACCATGGCTGGAGTAGCTATGACAACTCTTGGAAAGACATGGGCTGCAGATGAGTCAGAGTTAAGTACTTCCAGTTCTGGTCAACATTCAATTATAGGAGATATATTTGGACTTCTTTCTGCAGTTTCATATGGCATCTTCACTGTGCTGCTCAAAAAGCTTGCTGGTGCAGAAGGGGAGAAGGTGGATGTGCAGAAGTTCTTCGGATATATTGGATTGTTCAGTCTGGTCACCCTTTGGTGGCTTGTCTGGCCCTTGACTGCCATAGGCATCGAACCAAAATTTAGCATTCCAGATTCAGAAAAAGTGGATGAAGTTGTAATTGCAAATGGCTTTGTAGGAAGTGTTCTTTCAGACTACTTCTGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGGCATTATCTGTAGTGTGGACAACACCTTTAGTAGCCACTTTGGGCATGTCTCTTACTATACCTCTAGCAATGATAGCCGATATGGTAATTCATGGTCGCCACTATTCAGCAATATATTTTCTTGGTTCAGCACAGGTTTTTGCAGGGTTTGTGATTGCCAACCTTTCTGACCGGTGTTCAAGAAAGACAAGTTTATTGCATAATGGATTAATTTGA___GGAAT

Fln Alignment:

Contig12300___MGWRYNAGLLLIATVVFIWVTSAEVTQGIFSAYKQPFALTYLGVSLMVVYLPISFVKDWICSVIRKHCENYQTDA--IVDTSCYLDSLLKVVMMDEGSETGMQHCLSRKDNDNSLHAEEEGRPLLMNYSNDSGDLRHQTELTSWEVVKYSFCISPIWFASEYXXXXXXXXXXXXXXXVLSSTSGIFTLFFGALFGEDSLDIARVVSVFVTMAGVAMTTLGKTWAADESELSTSSSGQHSIIGDIFGLLSAVSYGIFTVLLKKLAGAEGEKVDVQKFFGYIGLFSXXXXXXXXXXXXAIGIEPKFSIPDSEKVDEVVIANGFVGSVLSDYFWxxxxxxxxxxxxxxxxxxxxxxxxxxxxxALSVVWTTPLVATLGMSLTIPLAMIADMVIHGRHYSAIYFLGSAQVFAGFVIANLSDRCSRKTSL
D7SV31_______________MSWKYRAGLFLIAAVVVIWVTSAEVTQGIFIDYKQPFAVTYLGASLMVVYLPIAFIKDWLCNSLKRRSSKSGKNAETLNESSAGLNSPLKHIGGQKTFELEHLGTLPRKDSETDYSAYEEGRPLVSKRRDDTDLLKQEKALTTRQIAIYGFYIAPIWFITEYFSNAALARTSVASTTVLSSTSGLFTLFIGALLGQDSLNVAKVVAVFVSMAGVAMTTMGKTWATDESKLSASLNGKRSLVGDLFGLLSAMSYGLFTVLLKKFAGEEGERVDVQKLFGYIGLFTLVALWWLVWPLTALGIEPKFTIPHSAKMDEVVIANGFVGSVLSDYFWxxxxxxxxxxxxxxxxxxxxxxxxxxxxxALCVVWTTPLVATLGMSLTIPLAMVADMMIHGRHYSAIYILGSAQVFAGFVIANLSDWFSKKLGL

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
118		25		75	0.996473
121			75	25	0.996473
122	75	25			0.996473
123	25			75	0.996473
132		80		20	0.995493
161		20		80	0.995493
182	20		80		0.995493
194			80	20	0.995493
360	33		66		0.997452
418			80	20	0.995493
551	66	33			0.997452
1109			11	88	0.923564
1110	88		11		0.923564
1111			11	88	0.923564
1160		11		88	0.923564
1215		14		85	0.993533
1289		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain