SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene12166

Length: 549 nt

Origin of reads: Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene12166
CACCAGTGATTTTAACAAGAAGTATATACAGAGAAGGGCTTAGAATGGGTAAACAAGACAGAGAGTCTGAAAGATGTGCTTAATCGTCACCATCCAGAACTGGTAGAAAAATGGATGAATTCATCAAGTGCATTTTCCGTGTGGAGTGCGAGCCCAGAGAAGAAGAACCACATTCCCCTGTATCTTCGCACTCCCCATTAGTCTATCGCTAATGTTGGTGTAATTTCATTACTGTTGTATAATTTCATTGCTGTTGTAATTTGTCTGTAATTTTTAACATCAGACCCCGTGTTGTTGTTGTAATCTCATTACCTTCGTATAATTCTAGTTATCAAATTCAAGCCTTTTGCGTGTGGCGGCATGAATCCAGGACCTCAAAATAAGAGTTCATATTTAAATTCGATCGGCTCAAGATATTGGATAAAAGTGATGGATTTCTGGACGATTAAATACTAATTAGTATGTAGTGAGTCATAGGCAATACGGTTGCCTCACATTTTGTTTTATAAGTAGAACGGAATTTGCCAATATCGATGTTCATATCTTATG

Ace file of the UniGene sp_v2.0_unigene12166 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Alpha-dioxygenase n=1 Tax=Pisum sativum RepID=Q5GQ66_PEA	-	-	2.0e-14	57%
FL-Next	tr=Alpha-dioxygenase; Pisum sativum (Garden pea).	-	-	0.0	69%
Blast2go	prostaglandin g h synthase 2-like	-	-	3.39389e-16	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	NAD(P)H oxidase.	EC:1.6.3.1	-	3.39389e-16	80%
Blast2go	Peroxidase.	EC:1.11.1.7	-	3.39389e-16	80%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Phenylalanine metabolism	00360		3.39389e-16	80%
Blast2go	Methane metabolism	00680		3.39389e-16	80%
Blast2go	Phenylpropanoid biosynthesis	00940		3.39389e-16	80%
Blast2go	Biosynthesis of phenylpropanoids	01061		3.39389e-16	80%
Blast2go	Metabolic pathways	01100		3.39389e-16	80%
Blast2go	Biosynthesis of secondary metabolites	01110		3.39389e-16	80%
Blast2go	Lipoxygenase.	EC:1.13.11.12	-	3.39389e-16	80%

Source	KEGGs	Term	e value	Identity
Blast2go	Linoleic acid metabolism	00591	3.39389e-16	80%
Blast2go	alpha-Linolenic acid metabolism	00592	3.39389e-16	80%
Blast2go	Biosynthesis of plant hormones	01070	3.39389e-16	80%
Blast2go	Metabolic pathways	01100	3.39389e-16	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to oxidative stress	GO:0006979	Biological Process	3.39389e-16	80%
Blast2go	response to salicylic acid stimulus	GO:0009751	Biological Process	3.39389e-16	80%
Blast2go	cell death	GO:0008219	Biological Process	3.39389e-16	80%
Blast2go	response to other organism	GO:0051707	Biological Process	3.39389e-16	80%
Blast2go	fatty acid alpha-oxidation	GO:0001561	Biological Process	3.39389e-16	80%
Blast2go	NAD(P)H oxidase activity	GO:0016174	Molecular Function	3.39389e-16	80%
Blast2go	heme binding	GO:0020037	Molecular Function	3.39389e-16	80%
Blast2go	peroxidase activity	GO:0004601	Molecular Function	3.39389e-16	80%
Blast2go	lipoxygenase activity	GO:0016165	Molecular Function	3.39389e-16	80%
Blast2go	endomembrane system	GO:0012505	Cellular Component	3.39389e-16	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	Haem peroxidase, animal	IPR002007	-	0.0	-
Sma3	Haem peroxidase, animal, subgroup	IPR019791	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: Q5GQ66

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 67 - 643

Fln protein: HQ*F*QEVYTDKGLEWVNKTESLKDVLNRHHPELVEKWMNSSSAFSVWSASPEKKNHIPLYLRTPH*

Protein Length: 68

Fln nts: CACCAGTGATTTTAACAAGAAGTATATACAGAtAAGGGCTTAGAATGGGTAAACAAGACAGAGAGTCTGAAAGATGTGCTTAATCGTCACCATCCAGAACTGGTAGAAAAATGGATGAATTCATCAAGTGCATTTTCCGTGTGGAGTGCGAGCCCAGAGAAGAAGAACCACATTCCCCTGTATCTTCGCACTCCCCATTAG___TCTATCGCTAATGTTGGTGTAATTTCATTACTGTTGTATAATTTCATTGCTGTTGTAATTTGTCTGTAATTTTTAACATCAGACCCCGTGTTGTTGTTGTAATCTCATTACCTTCGTATAATTCTAGTTATCAAATTCAAGCCTTTTGCGTGTGGCGGCATGAATCCAGGACCTCAAAATAAGAGTTCATATTTAAATTCGATCGGCTCAAGATATTGGATAAAAGTGATGGATTTCTGGACGATTAAATACTAATTAGTATGTAGTGAGTCATAGGCAATACGGTTGCCTCACATTTTGTTTTATAAGTAGAACGGAATTTGCCAATATCGATGTTCATATCTTATG

Fln Alignment:

Contig12166___F*QEVYTDKGLEWVNKTESLKDVLNRHHPELVEKWMNXXXXXXXXXXSPEKKNHIPLYLRTPH
Q5GQ66_______________FNEETYTKKGLEWVNTTESLKDVIDRHHPEMTHKWLNSSSAFSVWDTSPNKHNHIPIYFRVPN

SSRs (tot: 1)

Start position	End position	Sequence	Length
249	260	ACA ACA ACA ACA	12

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain