SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene12135

Length: 515 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene12135
CTCAAGGGCAACCAATAGACGAAAGTCACAAAGCGCTCTTGGAATGCTTGGCAACAAGTATAAATAATGTGGATAAAGAAGTCCGAGAATGCTTTCTGGACATGGCAATATTTCCAGAAGCCAGGAAAAAGCTGTGCCGATCCATTGTTAGACTTGGGTGTTTATGTTCATGACTTAGATTGGGTATCTGCTTACGCAGCTTTAGTAGAACTTGCGAGTAGAAATCTTGTGAATCTGGTGGACAATCCAAAACGTACTAGGAAAGCCTATCGGAGTAGCCGTGGGCTTTCCTTTACTCAGCATGATGTGCTTCGAGACCTGTGTATCCATAGGAGCAGGGAGAACCCTACAATTAATGAGCGCAAAAGGCTTATTATGCCTCAGAGAGCCGATGCAATTCCCAAAGACTGGGAAAAGGCCGCAGAGTGTGCATTCGCTGCTGAGATTGTTTCTCTCCATACAGGTTCAATGGAGGAGAAAGATTGGTGTCAAATGAAATTTCCAAAAGCCAAAGC

Ace file of the UniGene sp_v2.0_unigene12135

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Nbs-lrr resistance protein n=1 Tax=Populus trichocarpa RepID=B9GNZ1_POPTR	-	-	3.0e-32	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	52%
Blast2go	leucine rich repeat family expressed	-	-	1.46537e-33	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	apoplast	GO:0048046	Cellular Component	1.46537e-33	64%

Source	InterPros	Term	Type	Identity
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3		IPR014011	-	-
Sma3	Leucine-rich repeat-containing protein 40	IPR015766	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKC3

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 260 aas, your sequence is shorter than subject: 57 - 835

Fln protein: QGQPIDESHKALLECLATSINNVDKEVRECFLDMAIFPEARKKLCRSIVRLGCLCS*

Protein Length: 58

Fln nts: CTCAAGGGCAACCAATAGACGAAAGTCACAAAGCGCTCTTGGAATGCTTGGCAACAAGTATAAATAATGTGGATAAAGAAGTCCGAGAATGCTTTCTGGACATGGCAATATTTCCAGAAGCCAGGAAAAAGCTGTGCCGATCCATTGTTAGACTTGGGTGTTTATGTTCATGACTTAGATTGGGTATCTGCTTACGCAGCTTTAGTAGAACTTGCGAGTAGAAATCTTGTGAATCTGGTGGACAATCCAAAACGTACTAGGAAAGCCTATCGGAGTAGCCGTGGGCTTTCCTTTACTCAGCATGATGTGCTTCGAGACCTGTGTATCCATAGGAGCAGGGAGAACCCTACAATTAATGAGCGCAAAAGGCTTATTATGCCTCAGAGAGCCGATGCAATTCCCAAAGACTGGGAAAAGGCCGCAGAGTGTGCATTCGCTGCTGAGATTGTTTCTCTCCATACAGGTTCAATGGAGGAGAAAGATTGGTGTCAAATGAAATTTCCAAAAGCCAAAGC

Fln Alignment:

Contig12135___GQPIDESHK-ALLECLATSINNVDKEVRECFLDMAIFPEARK
B8LKC3_______________GESISDYHKEGLLRRLESSIDVLDEEARECFLDLGSFPEDRK

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
185	16			83	0.994512
199	16		83		0.994512
200		83		16	0.994512
229		16	83		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain