SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene12067

Length: 536 nt

Origin of reads: Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene12067
GTCTGTTAGCATTCAGAAGATATGGCACTTGCTTCAGGCATTGTTGGGGGAAGATAAAGAAGCACCGAGAAATGTATCAAGAAAGATGGCTATGATCAGTGGAGCAAGACGCCATTTAGAGGCTGGTCATGAGAAATATATACTGGACACTATCCAGAATCATGCTGCTCAGGCAGCTCTTGGAGGTTCCACTGGAAATCTGCAACGGGTTCGAGCCTTTTTGCGGGTGCGTTTAAGAGATTATGGCGTTTTAGACTTTGATGCACAAGACGGACGTAGACAACCTCCAGTGGACACGACATGGCAACAGATATACTTTTGCTTGAGAACTGGTTATTATGACGAAGCCAGGTCTGTAGCACAGTCTTCCAGAGTAAGCCAAATGTTTTCCCCACAGCTTGCTGAGTGGATTTCTAGTGGCGGCATGGTTTCACCTGGAACTGCATCTGCTGTTGCAGAAGAATGTGAACGCATGTTAAGAATGGGGGATCGAGCAGGGAGAGCTGGGTATGATAAACATAAGTTGCTACTGTATT

Ace file of the UniGene sp_v2.0_unigene12067 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Nuclear pore complex protein nup93, putative n=1 Tax=Ricinus communis RepID=B9S1E0_RICCO	-	-	73%
FL-Next	sp=Uncharacterized protein At2g41620; Arabidopsis thaliana (Mouse-ear cress).	-	-	67%
Blast2go	uncharacterized protein at2g41620-like	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	transport	GO:0006810	Biological Process	82%
Blast2go	protein binding	GO:0005515	Molecular Function	82%
Blast2go	transferase activity	GO:0016740	Molecular Function	82%
Blast2go	nuclear pore	GO:0005643	Cellular Component	82%
Blast2go	nucleolus	GO:0005730	Cellular Component	82%

Source	InterPros	Term	Type	e value	Identity
Sma3	UDP-glucuronosyl/UDP-glucosyltransferase	IPR002213	-	0.0	-
Sma3	Nucleoporin interacting component Nup93/Nic96	IPR007231	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O22224

Fln msg: Distance to subject end: 438 aas, your sequence is shorter than subject: 178 - 861

Fln protein: SVSIQKIWHLLQALLGEDKEAPRNVSRKMAMISGARRHLEAGHEKYILDTIQNHAAQAALGGSTGNLQRVRAFLRVRLRDYGVLDFDAQDGRRQPPVDTTWQQIYFCLRTGYYDEARSVAQSSRVSQMFSPQLAEWISSGGMVSPGTASAVAEECERMLRMGDRAGRAGYDKHKLLLY

Protein Length: 179

Fln nts: GTCTGTTAGCATTCAGAAGATATGGCACTTGCTTCAGGCATTGTTGGGGGAAGATAAAGAAGCACCGAGAAATGTATCAAGAAAGATGGCTATGATCAGTGGAGCAAGACGCCATTTAGAGGCTGGTCATGAGAAATATATACTGGACACTATCCAGAATCATGCTGCTCAGGCAGCTCTTGGAGGTTCCACTGGAAATCTGCAACGGGTTCGAGCCTTTTTGCGGGTGCGTTTAAGAGATTATGGCGTTTTAGACTTTGATGCACAAGACGGACGTAGACAACCTCCAGTGGACACGACATGGCAACAGATATACTTTTGCTTGAGAACTGGTTATTATGACGAAGCCAGGTCTGTAGCACAGTCTTCCAGAGTAAGCCAAATGTTTTCCCCACAGCTTGCTGAGTGGATTTCTAGTGGCGGCATGGTTTCACCTGGAACTGCATCTGCTGTTGCAGAAGAATGTGAACGCATGTTAAGAATGGGGGATCGAGCAGGGAGAGCTGGGTATGATAAACATAAGTTGCTACTGTATT

Fln Alignment:

Contig12067___SVSIQKIWHLLQALLGEDKEAPRNVSRKMAMISGARRHLEAGHEKYILDTIQNHAAQAALGGSTGNLQRVRAFLRVRLRDYGVLDFDAQDGRRQPPVDTTWQQIYFCLRTGYYDEARSVAQSSRVSQMFSPQLAEWISSGGMVSPGTASAVAEECERMLRMGDRAGRAGYDKHKLLLY
O22224_______________SVNMQKIWQLVQAITGEDSAVRQGVSKRMALAIGARHHLQHGHEKFIMDTIQTHPTQAALGGSVGNLQRIRAFLRIRLRDYGVLDFDSTDARRQPPVDTTWQQIYFCLRTGYYEEAREIARSTRSSQQFAPLLTEWITTDGMVAAESAAIASEECEKMLRMGDRLGRTAYDKKKLLLY

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
146	25			75	0.996473
147	25		75		0.996473
148			75	25	0.996473
150			75	25	0.996473
250	14	85			0.993533
254	71			28	1.0
256	14		85		0.993533
257		14		85	0.993533
258	14			85	0.993533
260		14		85	0.993533
262	14			85	0.993533
264		85	14		0.993533
270	14			85	0.993533
272			14	85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain