SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene12039

Length: 1857 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene12039

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	GTP-binding protein, putative n=1 Tax=Ricinus communis RepID=B9RI48_RICCO	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	40%
Blast2go	gtp-binding protein	-	-	84%

Source	GOs	Term	Type	Identity
Blast2go	GTP binding	GO:0005525	Molecular Function	84%
Blast2go	mitochondrion	GO:0005739	Cellular Component	84%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Sma3	Uncharacterised domain, carbohydrate kinase-related	IPR000631	-	-
Sma3	Ribonuclease H domain	IPR002156	-	-
Sma3		IPR002917	-	-
Sma3	Conserved hypothetical protein CHP00092	IPR004396	-	-
Sma3		IPR005289	-	-
Sma3	GTP binding domain	IPR006073	-	-
Sma3	Beta-grasp domain	IPR012675	-	-
Sma3	Domain of unknown function DUF933	IPR013029	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWU7

Fln msg: Separated hits, possible frame ERROR between 1122 and 1127, No stop codon before M and low homology subject, your sequence is shorter than subject: 371 - 392

Fln protein: MSLRTGIVGLPNVGKSTLFNALVENGKAQAANFPFCTIEPNVGVVTVPDPRLNVLSQLSKSQRTVPALMEFVDIAGLVKGASQGEGLGNKFLSHIREVDSIAQVVRCFEDNDIIHVNGKIDPKSDIEIINLELAFSDLDQIEKRMERLKKSKPKDSQAKVKEETEMAALQQIHGALMAGKPARSVNLSDYEKEAIRHLCLLTMKPVIYVANVAESDLIEPTKNPHVKAVVEIASELSSEVVAVSAQVEAELTELQPEERIEYLKSLGVTEGGLGSLIRATYNLLGLRTYLTTxxxKTKAWTIIAGMTAPQAAGVIHSDFEKGFIRAETVSYSDYVAVGSLAAAREKGLVRVEGKDYVVQEGDVMLFRFNV*

Protein Length: 372

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTGTTCCCCATATCGGTGCTTCTACCTTGCTCCTCTCGTGTTTTTCCAAAGCCAACCCATAAGCCACTGGGGTCGACACAAGTTGGTTGGTGCTCATCCTTTACCAAAGCACTTGCTGATGACACCAAATCAATTCGTTTATCATCCCTGTCATTCTCAGGAATCATTGTACCAGAAAACGCATGGCGCAGACAATATTCTTCCTCATCCAAAATCAGT_-_ATGAGCTTGAGGACAGGAATTGTTGGCCTGCCCAATGTGGGGAAGTCCACTCTTTTCAATGCCCTGGTTGAAAATGGAAAAGCTCAAGCAGCCAATTTTCCATTCTGCACAATAGAGCCAAATGTGGGTGTTGTTACTGTGCCAGATCCGCGCTTGAATGTACTTTCTCAGCTCAGCAAGTCACAACGTACGGTTCCAGCCTTAATGGAGTTTGTGGACATTGCAGGACTTGTCAAGGGAGCTAGCCAAGGAGAGGGTCTAGGAAATAAATTCCTTTCACATATTCGTGAGGTTGATTCCATCGCACAGGTTGTGCGTTGTTTTGAGGATAATGATATTATTCATGTCAATGGAAAAATTGATCCTAAATCAGACATAGAAATTATCAACTTGGAACTCGCATTTTCTGATCTTGATCAGATTGAGAAGAGAATGGAAAGGCTCAAGAAAAGCAAGCCAAAAGATTCACAGGCAAAGGTTAAGGAGGAAACAGAGATGGCTGCATTACAACAGATTCATGGGGCATTGATGGCTGGAAAACCAGCAAGATCAGTAAATTTGTCAGATTATGAAAAAGAAGCTATTCGACATCTTTGTTTGCTTACAATGAAACCTGTTATATATGTAGCCAATGTGGCTGAATCAGACCTTATTGAGCCTACTAAGAACCCTCACGTTAAAGCGGTTGTGGAAATTGCATCTGAGCTCAGCTCTGAGGTGGTGGCTGTCTCAGCACAGGTAGAAGCTGAATTGACTGAGCTCCAGCCAGAAGAGAGAATTGAATACCTAAAATCTCTTGGAGTTACTGAGGGAGGATTAGGATCTCTAATACGGGCAACATACAATCTTCTGGGTCTACGCACCTATTTAACAACTGGxxxxxxAAAGACAAAAGCATGGACAATAATTGCAGGAATGACAGCACCCCAAGCAGCTGGAGTTATTCATTCTGATTTTGAGAAGGGTTTCATACGTGCAGAGACGGTATCCTACAGTGATTATGTTGCTGTTGGCTCATTAGCTGCTGCCAGAGAGAAGGGATTGGTAAGAGTTGAAGGAAAAGATTATGTTGTACAAGAAGGAGATGTGATGCTGTTTCGATTTAATGTGTGA___TTCTGATTTTGAAGGGATGGAAATACACAATGAAACTCAATTTTGTCATTCTTTCCTTTAAACCAAGCTTCAAAACAAAGCTAATTTTGGTGGTTTCAGGGTTGATGCTAGATCATACTTTCGGATGGGGCCCTTTGAGTGTTGATTTTAGCAATCCTTGGACTTTTTTATTTATTAAAATGAGGTTGAAAGTGTATAGAGATCAGAGGACTAACAGAAATTAGTGAAAAATTGTCAGCGTCGTTTGCATTCCATTTGGAATCACTGAAGTTGTAATCTTCTTAGCTTCCATCATTAAGGAGCAGTAGTTGGACTGGGGCTTTATTCCTGATTGAATACTAAAGAGTAGTGAGTATTTGAATTAAAATGATTCCTATAACTGGTGTTTCTACAACCTAAGCTGCTTAGCTTGTATTAGCTTGTAATAAGATGACTTGAGAAAATTGATTCAGTTTCAACCCTGTTTGTTTCCACAAATAGCTCATAATCCCATGGTTGAAATA

Fln Alignment:

Contig12039___KISMSLRTGIVGLPNVGKSTLFNALVENGKAQAANFPFCTIEPNVGVVTVPDPRLNVLSQLSKSQRTVPALMEFVDIAGLVKGASQGEGLGNKFLSHIREVDSIAQVVRCFEDNDIIHVNGKIDPKSDIEIINLELAFSDLDQIEKRMERLKKSKPKDSQAKVKEETEMAALQQIHGALMAGKPARSVNLSDYEKEAIRHLCLLTMKPVIYVANVAESDLIEPTKNPHV-KXXXXXXXXXXXXXXXXXXXXXXXLTELQPEERIEYLKSLGVTEGGLGSLIRATYNLLGLRTYLTTGxxKTKAWTIIAGMTAPQAAGVIHSDFEKGFIRAETVSYSDYVAVGSLAAAREKGLVRVEGKDYVVQEGDVMLFRFNV
A9NWU7_______________RFSSHLKIGIVGLPNVGKSTLFNTLTKLS-IPAENFPFCTIEPNEARVNVPDERFDWLCSLYKPKSEVSAFLEVHDIAGLVRGAHQGQGLGNNFLSHIRAVDGIFHVCRAFDDPDVIHVEDVVDPVRDLEVITEELRLKDLEFMERRMEDLEKSMKRSNDKQLK--IEMECCQKVKAWLEEGKDVRLGDWKAAEVEILNTFQLLSAKPVVYLVNMTEKD-YQRKKNKYLPKIHSWVQGHGGEPIIPFSGALEQKLADMPPDEAAKYCEE-NKTQSALTKIIKTGFSAINLIYFFTAGxxEVKCWQVRKQIKAPQAAGAIHTDFERGFICAEVMKVEDLKELGSESAVKAGGKYRQEGKTYVVQDGDIILFKFNV

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
126	33			66	0.997452
143		66	33		0.997452
144			33	66	0.997452
146	66			33	0.997452
147		33		66	0.997452
691		75		25	0.996473
807		25		75	0.996473
808	25		75		0.996473
810		75		25	0.996473
897	12			87	0.992554
898		12		87	0.992554
916		87	12		0.992554
917		87		12	0.992554
1072	16			83	0.994512
1073		83		16	0.994512
1709	81			18	0.999994
1808	85		14		0.993533
1832	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain