SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene12006

Length: 1846 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene12006

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	AP-3 complex subunit delta [Arabidopsis thaliana] ref\|NP_849785.1\| AP-3 complex subunit delta [Arabidopsis thaliana] ref\|NP_001031156.1\| AP-3 complex subunit delta [Arabidopsis thaliana] sp\|Q9C744.1\|AP3D_ARATH RecName: Full=AP-3 complex subunit delta; Alt	-	-	2.0e-23	30%
FL-Next	sp=AP-3 complex subunit delta; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	45%
Blast2go	ap-3 complex subunit delta	-	-	0.0	51%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	51%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: Q9C744

Fln msg: Unexpected stop codon in the beginning of your sequence, query STOP codon too far from subject stop. Distance to subject end: 260 aas, putative chimeric sequence, your sequence is shorter than subject: 99 - 869

Fln protein: KVKY*TS*QSKSGCDYGW*RLHLVRSAWKFVCQFRKQLDSYSAIDHAVELIKLNVSPLSESEDVEVQERACNLLGLITALEGIPGCLLENQILKKFKI*

Protein Length: 100

Fln nts: CAAGGTCAAATATTGAACTTCCTAGCAGAGCAAGAGTGGATGCGATTATGGATGGTGAAGACTTCACCTTGTCAGAAGTGCATGGAAGTTTGTCTGTCAATTCAGGAAACAACTCGATTCATATTCTGCAATTGATCATGCTGTTGAGCTAATCAAACTGAATGTCAGTCCCCTTTCAGAAAGTGAAGATGTGGAGGTGCAGGAGAGGGCATGCAATTTACTAGGCCTTATAACGGCACTAGAAGGCATTCCAGGGTGTCTTTTGGAAAATCAAATCCTAAAGAAATTCAAGATATAG___GGATAAACCAGGATTCTGGCGCTGCCCAGATTATCACATACATGAATAGTATATTTGCGCAAGAGCTTAGTCCTGTTTCAGTGCTTGCACAAGGAAGAGTACCATTACCAGATGGGCTTGTCCTCAAGGAGAATCTCGATGATTTGGTCAAAATTCTAGGCGATGAGCAAGTTTTAGATGACGGAGGTGTGGAGTGGTCTATCCCTCAGCATAGAGAGTGGGATGATGCTCCTGTGTTTTGTCAGCGCACTAAGGAAGAGTCACCATCAATTGGAGAATCAACTTCACTTTTAGCCCAACACCGACAGCGACATGGTGTGTTCTATCTACCTACAGGGAAAGATGAAACAAAAACTGATGACTATCCTCCACCTCAACTCGATGTCCCTTCTGGAGTGTCTGATGTAAACAAAGATATTTTGAAGCTTGCAGAGCAGTCTTTTCTTGCCACAAAACCACAACGGACTAAAGCACGGCCTGCAGTGATAAGGTTGGATGAGGGAGATGATGAACCAGTGTTAGCCACCAAGCAGGCAAAGAATTTGAAAGAAAATTATATTTCAAATGCCATCAAAGAAGCGCTATCTAGCGATAAAAATAAGCATTCAGTGGGGTCTGGTAGGGGTCAGGAAAAACTAGCTAAAGCTCCATCTGCTGAACATCATCATCGATCAGGACGGCGTTCTGAAACTTCTTCCAGGGGAGAGGACGGGAAAGAGGTAAAAGTGGGCAATACGGCCATTAATGTTTCAGAGGGGCATATTGATGGCACGAAAGGAAATAAAACTGAAAAGCACAGTTCCAGCAGGCACAAACATTCAAAGCATGAAAAGGAGGCATATAAACAATTTGAATTGAATTCCGAAGAGAAGGATGGACATTCGGAAAGGCATCTAAGAGGACATTCAAAAAAAGAAAATCATCGTCATTCAAAGCATCGGAATCGACAAAGAGCAGATAGCCCCCTAAAAGTGGCTCCACAAACACCTGTTATTCCAGATTTCCTTTTATAGACACAATCTTTAGTTTTCCCGCTTACTCTGTAAAACAAAGAGGGAAGAAGCCAGTGAACATCCTTTTTTGGCTTGGATAAACGCATTTTTGATCAATGGGGAGCTGTGAATCCCATTATCAGCATTTTTCGTCGCCCACTCTAACCTGAGGAGTTGTCCAATTTGATCAATGTGCAACCTAGGGATTTACACCTGCCAGATTTTGATCCTGGGTTGTTTGCACGGCAATACATCTTCTCAACCACTGGACCACAGCCTGACGGATGCGTCTTTCTAATTTTTGATAGTAATTGTCGTGACTGGCTGTTTTACAGGTTAGTGCAGTCAATATCATTCTTTTCAATAGAGACACATCGTATGCTTTTTTTGTAATCATTTGCGTTTTTTGTAATCATTTTATATTTGTGCAAAAATTGTAGCATTTTTCAATGTTGCTTCAACAGAAAGTGCTCCAGCTTTTATGCTTGGTTGTAAGATTCTTTGTATTAAATATATATTGGTACTTGACATTATAGATTTGGAGATTGGCCAAAAT

Fln Alignment:

Contig12006___SYSAIDHAVELIKLNVSPLSESEDVEVQERACNLLGLITALE
Q9C744_______________THESILSLVNVIELGLGPLSGYHDVEVQERAKNVLGYISVIK

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
417		66	33		0.997452
512		33		66	0.997452
1135			87	12	0.992554
1136			87	12	0.992554
1180	90		10		0.90298
1227	16		83		0.994512
1278	20	80			0.995493
1280		80	20		0.995493
1281		80	20		0.995493
1282	80		20		0.995493
1384	33			66	0.997452
1482		33		66	0.997452
1570	20		80		0.995493
1571		80		20	0.995493
1575	80		20		0.995493
1577	20		80		0.995493
1579	80		20		0.995493
1582		80		20	0.995493
1786	33		66		0.997452
1788	66		33		0.997452
1789	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain