SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene11975

Length: 584 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene11975

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CDC5 protein n=3 Tax=Andropogoneae RepID=Q8W149_MAIZE	-	-	6.0e-27	100%
FL-Next	tr=R2R3-MYB transcription factor MYB3; Pinus taeda (Loblolly pine).	-	-	0.0	40%
Blast2go	myb transcription factor	-	-	4.49929e-33	99%

Source	GOs	Term	Type	e value	Identity
Blast2go	small GTPase mediated signal transduction	GO:0007264	Biological Process	4.49929e-33	99%
Blast2go	defense response to bacterium	GO:0042742	Biological Process	4.49929e-33	99%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	4.49929e-33	99%
Blast2go	defense response signaling pathway, resistance gene-dependent	GO:0009870	Biological Process	4.49929e-33	99%
Blast2go	defense response signaling pathway, resistance gene-independent	GO:0010204	Biological Process	4.49929e-33	99%
Blast2go	defense response to fungus	GO:0050832	Biological Process	4.49929e-33	99%
Blast2go	DNA binding	GO:0003677	Molecular Function	4.49929e-33	99%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	4.49929e-33	99%
Blast2go	GTP binding	GO:0005525	Molecular Function	4.49929e-33	99%
Blast2go	chloroplast	GO:0009507	Cellular Component	4.49929e-33	99%
Blast2go	nucleus	GO:0005634	Cellular Component	4.49929e-33	99%

Source	InterPros	Term	Type	Identity
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3		IPR012287	-	-
Sma3		IPR014778	-	-
Sma3	Myb transcription factor	IPR015495	-	-
Sma3	Myb-like domain	IPR017877	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-

Full-Lengther Next Prediction

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
315			80	20	0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
234	248	CAAAG CAAAG CAAAG	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain