SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene11960

Length: 1929 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene11960

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Serine/threonine protein kinase, putative n=1 Tax=Ricinus communis RepID=B9REC4_RICCO	-	-	84%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	39%
Blast2go	serine threonine kinase	-	-	94%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-tyrosine kinases.	EC:2.7.10.-	-	0.0	94%
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	94%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	94%
Blast2go	protein tyrosine kinase activity	GO:0004713	Molecular Function	94%
Blast2go	ATP binding	GO:0005524	Molecular Function	94%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	94%
Blast2go	nucleus	GO:0005634	Cellular Component	94%
Blast2go	chromosome, centromeric region	GO:0000775	Cellular Component	94%
Blast2go	mitochondrion	GO:0005739	Cellular Component	94%

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Ribosome maturation factor RimP	IPR003728	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Ribosomal protein S12/S23	IPR006032	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LR19

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 234 aas, putative chimeric sequence, your sequence is shorter than subject: 249 - 902

Fln protein: VPDNVIREDPSTKYELLDELGKGSYGAVYKARDLKTSELVAIKVISLCEGEEGYEEIRGEIEMLQQCNHPNVVRYFGSYQSEEYLWIVMEYCGGGSVSDLMNITYEPLEEHQIAYICREALKGLSYLHSIFKVHRDIKGGNILLTEQGEVKLGDFGVAAQLTRTMSKRNTFIGTPHWMAPEVIQESRYDGKVDVWALGVSAIEMAEGAPPRANVHPMRVLFMISGEPAPMLEDKEKWSLVFHDLLLNA*

Protein Length: 250

Fln nts: CAGTTCCAGACAATGTAATCAGAGAAGATCCATCTACGAAGTACGAGTTGCTTGATGAGCTTGGAAAAGGGTCTTATGGAGCCGTCTATAAAGCTAGAGATCTCAAAACTTCAGAACTGGTTGCCATCAAAGTGATCTCCTTATGTGAAGGGGAGGAGGGCTATGAGGAGATACGGGGAGAAATTGAAATGCTACAGCAATGCAATCACCCAAATGTAGTACGGTACTTTGGAAGCTATCAGAGTGAGGAGTATCTCTGGATAGTAATGGAGTATTGTGGGGGAGGAAGTGTTTCTGATTTGATGAACATTACTTACGAACCCTTGGAGGAACATCAAATCGCCTACATTTGTAGGGAAGCTCTCAAGGGCTTGTCTTATTTACATTCAATTTTCAAGGTTCACCGTGATATAAAGGGCGGTAACATATTGCTTACAGAGCAGGGGGAGGTCAAACTTGGGGACTTTGGCGTTGCAGCACAGCTGACTAGGACAATGTCGAAACGTAATACGTTTATTGGTACTCCACACTGGATGGCTCCTGAAGTGATTCAGGAGAGTCGCTATGATGGAAAGGTAGATGTATGGGCGCTAGGAGTGTCTGCAATAGAGATGGCAGAGGGTGCTCCACCTAGAGCCAACGTGCATCCAATGAGAGTGCTGTTCATGATATCAGGTGAGCCTGCACCAATGCTAGAGGACAAGGAGAAATGGTCTCTGGTTTTCCATGATTTATTGCTAAATGCCTAA___CAAAGGAGCCTCGGCTACGGCCTACAGCCACTGAAATGCTGAAGCATAAGTTCATCGAAAAATGCAAGGGAGAAGCTGCTTCCATGTTACCAAAAATAGAGATTGCAAGGCAAACAAAAATTGAAATGGCTGCACAAGCATTTACCCAAGGGCCAGGAACATCATCTTCGGGTGGTGGACAATGGTCATGGGAGAAAGGACAGACATTGAAAATGAATGAAACTTATGGAGGAACAGTTCCCCTTTCTGAAGTAGCAGATGACCTAATTCCAGCTAGCACTGCTGGAAGGTCAGCAACAGGTCCTGATGAAGAGGCACAGGCAGAAGGTGAGTTTGGGACAATTGTAGTTCACAAAACTGCTTCACCAATTGTGTTAACAAAGATTTGAATGAGAGTGGTCGTATATCAAGTACTGAGAACATCAACACCACATCTGTAGATATTGAAACTTCTAGGTTGGATACATTATCCGCCAAGACTTCCCAAACAAGGTTGGACAAAATGGAAGTTGGAGCTCAGGAAACCCCATCAATATCGGGGACAGTTTTAGGAGCATCAAATGAAATAGAAGCTTCATTTTCTCCCCTTACTTCTCCTGGATCACATTTTAAAGTACAGTCCATTACTGGAAAGAAAGTGCAAGGTGAAGATAGTGAGACTCGACCGAGTCCCAGTGTTGGAGGAACACTAAAGAGTGCTACAACTGCCAGTCACCAGGGTTTTGCTCTTCAAGATAAGCTGTTATCAATTTATGCAGCTGGTAATACTGTGCCCATCCCATTTTTGAAGGCTACAGATATATCCCCTATTGCTTTGATATCAGATAACATATATGGGGATGGTGAGCCAGACCATAGTGGTGCTATTGCATTGGAAGCTATCCAAGAGCTCTATAATGGTGGAAGCCTTGGAGATGGGCAGCTACGAAAAGGGAGAAGGACTCCAAACAATGAGATGCCTCTTCCTCCCAGTGTATGTCAGAGGCTGGCGACAAGTACAACACTCCTAAATCTTGCACGGGCACTTGCTTATCATAAAATGTGCTATGAAGAGATGCCACTGCAAGGATGGCAAGCAGTGCAAGAGCAACGAACTATTCAGAACCTCTCAGACACACTAAGAACAATCCTGCGGTTATGATTGATCAAATACACCGCAGATATTCTCTTAACATGGCAA

Fln Alignment:

Contig11960___LGKGSYGAVYKARDLKTSELVAIKVISLCXXXXXXXXXXXXXX----MLQQCNHPNVVRYFGSYQSEEYLWIVMEYCGGGSVSDLMNITYEPLEEHQIAYICREALKGLSYLHSIFKVHRDIKGGNILLTEQGEVKLGDFGVAAQLTRTMSKRNTFIGTPHWMAPEVIQESR--YDGKVDVWALGVSAIEMAEGAPPRANVHPMRVLFMISGEPAPMLED
B8LR19_______________LGCGTFGTVYVGFNRETGDMCAMKEVPLVPDDSKSSESIKQLEQEINLLSGLEHPNIVQYYGSETVEDLFYIYLEYVPGGSIYKLVN-DYGPLEEPVIRIYTRQILSGLAYLHSMNTVHRDIKGGNILVDTYGRVKLADFGMAKHINGPATPL-SLKGSPYWMAPEVLMQKNTGHDLAVDIWSLGCTVIEMATGKPPWSEYEGAAAMFKVFKSEVPPIPD

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1888	16	83			0.994512
1890			83	16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain