SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene11950

Length: 612 nt

Origin of reads: Biogeco3 v1

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene11950 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam12807, eIF3_p135, Translation initiation factor eIF3 subunit 135	-	-	6.0e-34	35%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	78%
Blast2go	protein kiaa0664 homolog	-	-	0.0	83%

Source	GOs	Term	Type	Identity
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	83%
Blast2go	translational initiation	GO:0006413	Biological Process	83%
Blast2go	translation initiation factor activity	GO:0003743	Molecular Function	83%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	Zinc finger, BED-type predicted	IPR003656	-	-
Sma3	HAT dimerisation	IPR008906	-	-
Sma3	Quinonprotein alcohol dehydrogenase-like	IPR011047	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3		IPR013084	-	-
Sma3	Tetratricopeptide TPR2	IPR013105	-	-
Sma3	DNA ligase, ATP-dependent, conserved site	IPR016059	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Full-Lengther Next Prediction

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
154	75			25	0.996473
266	80		20		0.995493
497	33		66		0.997452
498		33	66		0.997452
501	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain