SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene11939

Length: 1309 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene11939 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Acetyl-CoA carboxylase, putative n=1 Tax=Ricinus communis RepID=B9SFG9_RICCO	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	46%
Blast2go	methylcrotonoyl- carboxylase subunit alpha	-	-	76%

Source	ECs	Term	Type	e value	Identity
Blast2go	Biotin carboxylase.	EC:6.3.4.14	-	0.0	76%

Source	KEGGs	Term	Type	Identity
Blast2go	Fatty acid biosynthesis	00061		76%
Blast2go	Metabolic pathways	01100		76%
Blast2go	Methylcrotonoyl-CoA carboxylase.	EC:6.4.1.4	-	76%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Valine, leucine and isoleucine degradation	00280		0.0	76%
Blast2go	Metabolic pathways	01100		0.0	76%

Source	GOs	Term	Type	Identity
Blast2go	leucine catabolic process	GO:0006552	Biological Process	76%
Blast2go	cobalt ion binding	GO:0050897	Molecular Function	76%
Blast2go	ATP binding	GO:0005524	Molecular Function	76%
Blast2go	biotin carboxylase activity	GO:0004075	Molecular Function	76%
Blast2go	methylcrotonoyl-CoA carboxylase activity	GO:0004485	Molecular Function	76%
Blast2go	mitochondrion	GO:0005739	Cellular Component	76%
Blast2go	cytosolic ribosome	GO:0022626	Cellular Component	76%

Source	InterPros	Term	Type	Identity
Sma3	Biotin/lipoyl attachment	IPR000089	-	-
Sma3	Serine/threonine dehydratase, pyridoxal-phosphate-binding site	IPR000634	-	-
Sma3	Pyruvate carboxyltransferase	IPR000891	-	-
Sma3	Biotin-binding site	IPR001882	-	-
Sma3	Carboxylase, conserved domain	IPR003379	-	-
Sma3	Allophanate hydrolase subunit 2	IPR003778	-	-
Sma3	Allophanate hydrolase subunit 1	IPR003833	-	-
Sma3	Acetyl-CoA carboxylase, biotin carboxylase	IPR004549	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	Carbamoyl-phosphate synthase, large subunit, N-terminal	IPR005481	-	-
Sma3	Biotin carboxylase, C-terminal	IPR005482	-	-
Sma3	Pyruvate carboxylase	IPR005930	-	-
Sma3	ATP-grasp fold	IPR011761	-	-
Sma3	Biotin carboxylation domain	IPR011764	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-
Sma3	ATP-grasp fold, subdomain 1	IPR013815	-	-
Sma3	ATP-grasp fold, subdomain 2	IPR013816	-	-
Sma3		IPR013817	-	-

Full-Lengther Next Prediction

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1114	75	25			0.996473
1143	66			33	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
1256	1267	CCA CCA CCA CCA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain