SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene11926

Length: 919 nt

Origin of reads: Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene11926 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Histidine kinase 1 plant, putative n=1 Tax=Ricinus communis RepID=B9SUH7_RICCO	-	-	8.00001e-41	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	38%
Blast2go	histidine kinase osmosensor protein	-	-	4.2039e-45	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	seed maturation	GO:0010431	Biological Process	4.2039e-45	65%
Blast2go	response to water deprivation	GO:0009414	Biological Process	4.2039e-45	65%
Blast2go	response to osmotic stress	GO:0006970	Biological Process	4.2039e-45	65%
Blast2go	regulation of cellular process	GO:0050794	Biological Process	4.2039e-45	65%
Blast2go	cellular metabolic process	GO:0044237	Biological Process	4.2039e-45	65%
Blast2go	histidine phosphotransfer kinase activity	GO:0009927	Molecular Function	4.2039e-45	65%
Blast2go	osmosensor activity	GO:0005034	Molecular Function	4.2039e-45	65%
Blast2go	protein binding	GO:0005515	Molecular Function	4.2039e-45	65%

Source	InterPros	Term	Type	Identity
Sma3	Signal transduction response regulator, receiver domain	IPR001789	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	-
Sma3	Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain	IPR003661	-	-
Sma3	Signal transduction histidine kinase-related protein, C-terminal	IPR004358	-	-
Sma3	Signal transduction histidine kinase, core	IPR005467	-	-

Full-Lengther Next Prediction

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
446	33		66		0.997452
449			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain