SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene11906

Length: 1285 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene11906

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RING/U-box domain-containing protein [Arabidopsis thaliana] ref\|NP_851231.1\| RING/U-box domain-containing protein [Arabidopsis thaliana] dbj\|BAB08241.1\| unnamed protein product [Arabidopsis thaliana] gb\|AED97347.1\| RING/U-box domain-containing protein [Ar	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	45%
Blast2go	zinc finger (c3hc4-type ring finger)	-	-	60%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell part	GO:0044464	Cellular Component	0.0	60%

Source	InterPros	Term	Type	Identity
Sma3	3-hydroxyisobutyrate dehydrogenase-related, conserved site	IPR002204	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	YrdC-like domain	IPR006070	-	-
Sma3	6-phosphogluconate dehydrogenase, NADP-binding	IPR006115	-	-
Sma3	Zinc finger, RING-CH-type	IPR011016	-	-
Sma3	3-hydroxyisobutyrate dehydrogenase	IPR011548	-	-
Sma3	Dehydrogenase, multihelical	IPR013328	-	-
Sma3	3-hydroxyacid dehydrogenase/reductase	IPR015815	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	DHBP synthase RibB-like alpha/beta domain	IPR017945	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
631	33		66		0.997452
652	66	33			0.997452
810		10		90	0.90298
890			12	87	0.992554
892		12		87	0.992554
893			12	87	0.992554
895			12	75	0.975346
900	87		12		0.992554
905	12			87	0.992554
933	87		12		0.992554
954	14			85	0.993533
955		14	85		0.993533
956	14		85		0.993533
958			85	14	0.993533
994	20	80			0.995493
995		20	80		0.995493
998			80	20	0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain