SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene11905

Length: 1578 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene11905

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Acid phosphatase n=4 Tax=Oryza sativa RepID=Q67WU6_ORYSJ	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	74%
Blast2go	purple acid phosphatase-like protein	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	Acid phosphatase.	EC:3.1.3.2	-	0.0	83%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Aminobenzoate degradation	00627		0.0	83%
Blast2go	Riboflavin metabolism	00740		0.0	83%

Source	GOs	Term	Type	Identity
Blast2go	protein dephosphorylation	GO:0006470	Biological Process	83%
Blast2go	metal ion binding	GO:0046872	Molecular Function	83%
Blast2go	protein serine/threonine phosphatase activity	GO:0004722	Molecular Function	83%
Blast2go	acid phosphatase activity	GO:0003993	Molecular Function	83%
Blast2go	protein serine/threonine phosphatase complex	GO:0008287	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	Fibronectin, type III	IPR003961	-	-
Sma3	Metallophosphoesterase domain	IPR004843	-	-
Sma3	Fatty acid hydroxylase	IPR006694	-	-
Sma3	Purple acid phosphatase, N-terminal	IPR015914	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVR5

Fln msg: Separated hits, possible frame ERROR between 343 and 345, and possible frame ERROR between 539 and 541, your sequence is shorter than subject: 399 - 517

Fln protein: AIIVSWVTPAEIGSSEMFYGTTEHNYDHSAEGSVTQYTFYNYTSGFIHHCLIDGLEYNKKYYYKVGNGSSAREFWFFTPPKIDPDAAYKFGIIGDLGQTFHSLSTFEHYLKNPxxQTVLYVGDLSYADDYEFDNGVRWDTWGRFVEPNTAYQPWIWTSGNHEIEFREDLGENVPFKPFLxIRYHVPHKASSSTSPLWYAIKQASAHIIILSSYSPFVKYTPQWTWLRRELKRVDRKKTPWLLVLMHSPMYNSNSYHYMEGESMRVVFEPWFVKYKVDVVFCRSCSCI*AIVSVFKYSI*YYKWRLFTYKRHIGPNLYNYW*RWKP*RARWSLHRTTTCILSFP*GQLWPCYAGDHEPHPCLLLLEPQ**WCICGVRFNLVAQPILVE*TPNASKEQTK*

Protein Length: 400

Fln nts: GGCAATTATTGTGTCTTGGGTGACTCCTGCAGAGATTGGATCCAGTGAGATGTTTTATGGCACAACAGAGCATAATTATGATCATTCTGCAGAAGGCTCAGTAACACAATACACATTTTACAACTATACATCTGGTTTCATTCATCATTGTCTTATTGATGGCCTTGAGTATAATAAGAAGTACTATTACAAAGTTGGGAATGGGAGTTCTGCACGAGAGTTTTGGTTTTTCACACCTCCAAAAATTGACCCTGATGCTGCCTATAAGTTTGGAATAATAGGGGACCTTGGACAAACGTTCCATTCCCTTTCAACTTTTGAGCATTATTTGAAAAATCCTGGxxxACAAACAGTTCTATACGTTGGTGATCTCTCTTATGCTGATGATTATGAGTTTGACAATGGGGTTCGATGGGATACATGGGGCCGCTTTGTGGAGCCAAACACTGCTTATCAGCCGTGGATCTGGACATCAGGAAATCATGAAATAGAATTCAGAGAAGATTTGGGAGAAAATGTTCCTTTTAAACCTTTTTTGxxxATTCGATACCATGTGCCTCACAAAGCCTCTAGCAGTACTTCTCCTCTTTGGTATGCCATCAAACAGGCATCTGCTCATATTATCATCTTGTCAAGCTACTCTCCATTTGTAAAATATACACCTCAATGGACTTGGCTACGGAGAGAGCTAAAACGCGTCGACAGGAAGAAAACACCATGGCTTTTAGTTCTCATGCATTCTCCTATGTACAACAGCAATAGTTACCACTACATGGAAGGAGAAAGTATGCGTGTTGTATTTGAGCCATGGTTTGTCAAATACAAAGTTGATGTTGTGTTTTGCAGGTCATGTTCATGCATATGAGCGATCGTATCGGTATTCAAATATAGCATATAATATTACAAATGGAGATTGTTCACCTACAAAAGACATATCGGCCCCAATCTATATAACTATTGGTGACGGTGGAAACCTTGAAGGGCTCGCTGGAGTCTTCACCGAACCACAACCTGCATACTCAGCTTTCCGTGAGGCCAGTTATGGCCATGCTATGCTGGAGATCATGAACCGCACCCATGCCTATTATTACTGGAACCGCAATGATGATGGTGTATTTGTGGCGTCAGATTCAATTTGGTTGCACAACCGATATTGGTCGAGTAAACTCCAAATGCATCCAAGGAACAGACCAAATGA___AGCTCATGAAAACATCAATACTGACCACCAGAAGATGCGGTCTGTATCATCAAAATTTACCAAGGAAACCAAAGATTCCCTGGGGTATTGAAGGACATACTGTGAAGTTATGCGTATTTAACATGCAAAATTTTCTAGCTTGAACATATTGAGTTTATGTACAGTGCATTTTATGGCCATTCATTCTCTGTCCAATTGGACCGAAAGAAGTGATTCTTGTTAGGTACTTAATGGCTCCTTTGGAATGGATTTTATATTCCATAAGTTAGCTTATGGATTAGAGAAATAAATGTGACATCGTAAAATAGTCAATATATATAGAATTATCTGGGTGGAGATTCAGAATTCTGCATCATTCTATTTATTATAACAATTCTATTCTTT

Fln Alignment:

Contig11905___AIIVSWVTPAEIGSSEMFYGTTEHNYDHSAEGSVTQYTFYNYTSGFIHHCLIDGLEYNXXXXXXVGNGSSAREFWFFTPPKIDPDAAYKFGIIGDLGQTFHSLSTFEHYLKNPGxQTVLYVGDLSYADDYEFDNGVRWDTWGRFVEPNTAYQPWIWTSGNHEIEFREDLGENVPFKPFLHxRYHVPHKASSSTSPLWYAIKQASAHIIILSSYSPFVKYTPQWTWLRRELKRVDRKKTPWLLVLMHSPMYNSNSYHYMEGESMRVVFEPWFVKYKVDVVF
A9NVR5_______________AVIVSWVTSAEPGSSEVFYDTVEHNYKYRAKGNITTYTFFNYTSGFIHHCLIIDLEYDTKYYYKIGNESSAREFWFSTPPKIAPDAAYTFGIIGDMGQTFNSLSTFNHYLQSNGxEAVLYVGDLSYADNYEYDNGIRWDTWGRFIEPSAAYQPWIWTAGNHEIEFRPKLGKTIPFEPYLHxRYQVPYTASGSTSPLWYSIKRASAHIIVLSSYSPYAKYTPQWVWLRSELQHVDREKTPWLIVLMHAPLYNSNSFHYMEGESMRTVFELWFIKYKVDIIF

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
192	80			20	0.995493
193	80			20	0.995493
983		80	20		0.995493
1004	87			12	0.992554
1005		87	12		0.992554
1006	85			14	0.993533
1007	85	14			0.993533
1008	14	85			0.993533
1011		14	85		0.993533
1012	14	85			0.993533
1063	28			71	1.0
1064		28	71		1.0
1066	71			28	1.0
1067		71		28	1.0
1129		71	28		1.0
1131	71	28			1.0
1132		28		71	1.0
1133	14			85	0.993533
1134		14		85	0.993533
1135	14		85		0.993533
1136			85	14	0.993533
1137		28		71	1.0
1140		66		33	1.0
1144	66	33			1.0
1145		66		33	1.0
1147	33		66		1.0
1529		20		80	0.995493
1530			80	20	0.995493
1531			60	20	0.99255
1532	80	20			0.995493
1534	40	20	40		1.0
1544		50		50	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain