SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene11889

Length: 2195 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene11889
CGTCGTGACCTTGGCTGTCACTCATTTATGTCCCGGTTGGATGATATGAAGGGGAAGGTTCAAAGTCTTCGAGATCTCTCTTCAAGCTTTTTCCTACTAGAATCTATTTACAGCAGCCACAGGATGAAAACATGGCCATGGATTGGAACCAACAATTGGAACAAGATATTGAAAGACTAAAGGCAGAAGCCAATAGGCAACAACTTCGCATGGTCATGGGATCTTCAGGCATCACATGTAAAGATCTGACGGAACTTGACATTAAGAACCACATTCTAACTTATGATATGGCAGAAAAGGTGGTAGGATGGGCTGTAAGCCGCCAGTTGCAGAAAGATGCGGAACCAGTTTTATTTAATGGAAAGCTGGTTATAACTGCTGAAAGCATGCAGAATACCCTTACAGAGCTTCTATCTGTGCAACGAGCTTCACCACTTAAAAAATCTTTGAAGGATGTTACATGTGACAATGAGTTTGAGAAGATACTAATATCTGAAGTTATTCCACCGGATGAACTAGGAGTCACGTTTGATTGTATTGGAGCCCTTGACAACGTTAAAGAAGCACTTAGGGAGCTAGTTATGTTGCCATTGCAGCGACCAGAGCTCTTTGCAAAGGGACAATTACGGAAGCCGTGCAGAGGTCTTCTTCTGTTTGGTCCTCCTGGAACTGGAAAAACAATGCTTGCGAAGGCTGTTGCCACAGAAGCAGGGGCAAATTTTATAAATATCTCAATGTCGACAGTTGCATCAAAGTGGTTTGGTGAAGCAGAGAAGTATGTCAAGGCGGTGTTTACTTTAGCTAATAAAATAGCCCCTAGTGTTATATTTATTGATGAGGTGGACAGCATGCTGGGAAGAAGAGGAAAGGACTCTGAGCATTCTGCTATGCGTAAGCTAAAGAATGAATTTATGGCTAGTTGGGATGGTCTCAGGACACGGGATAAAGAACGAGTGCTGGTTCTTGCTGCTACAAACCGTCCATTTGATCTAGATGAAGCAGTCATTCGAAGGTTTCCAAGGAGGTTAATGGTTGATCTCCCAGATGCTGAGAACCGAGTAAAAATCCTCAGGGTCATCCTAGTAGATGAAGACTTGGCACCAGATTTTAATATAGAGGAATTGGCTACTGCCACTGATGGCTACTCGGGAAGTGACTTGAAGAGCTTATGCACGACTGCTGCATATCAACGAATTCGTGAGCTATTAGATCAAGAAAGTAAGGAGAGAGAGAAAGCAAAATCTGAAGGACAGCCTCCACCTCTAACCTCTAAAACACCTGAACTCCGTCCCATAAGTATGTCTGATATGCGACAAGCCATGGAAAAGGTTCGTTCTAGTGTCTCTTCAGATGCTCGAAGTATTCTTGAATTGCGGCAATGGAATGAGCAATATGGAGAAGGTGGAACAAGGAAGGTGATGACTTTAAGTTATTTCATGTGAAATAAGCTACACCTTTTAAGAGGTAAGAAACATCATGTAATCTGGAGATCATAAATTGTAAATCTTCAACTGGAGCTGATTATGGTACCAGTATTTTGGCAAGTGTTTCACAAGTTCACAGGAGTTTAATTTTCGAACTTCTGGAAGGTGGAAGGTTGATTTCCAATATAATGTCAGTAGGAAATGCGTCATGAAATAAGTGAGATGAGCTTGACTCTAATAAAATGGCTTCTGATCCAAATTAGGAGAAACTTCTAATCATGATGACAGAAAATCTCAAGGAAGTGCATGGCATGTCTGGACTTATTGGTTAACAGGTCAAGGAAATACATTCTACCTACATCAAAACATCTAAAGTAAATTTATTGGCAGGTGAACAGGCACATTTATGCAAAAAATCTTCAAACACATATCTGAATGAGTCACTGATAGGGTTGAAGCCCTAAAGATAATGGTTTACATTCTTTAGCATGAACTTTACACTGTAAGGAATTATATAATTTTGATACCTTTCTCAGTAGAGTTTTACAGTCGCGCACAGATTGAGGTAAACCGCAAAGCTGAATCAAATGATTTCATTGTCGTATTATTTGCCAGATGCCCACTTATGGTGAATTATCTGTACCAGAGCTCTGCTTCTAATCAAGTGTATAAAATAAATGAGATGAAAAATTCCAAATTTTTAGATATAGACATATTCCAATTTCCAATTATGTCATGAAGTAGTCTCAGGTTGTCATCTTTAACAAAGGT

Ace file of the UniGene sp_v2.0_unigene11889

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	AAA-type ATPase family protein [Arabidopsis thaliana] dbj\|BAF01763.1\| hypothetical protein [Arabidopsis thaliana] gb\|AEE82177.1\| AAA-type ATPase family protein [Arabidopsis thaliana]	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	51%
Blast2go	protein	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Nucleoside-triphosphatase.	EC:3.6.1.15	-	0.0	80%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	80%
Blast2go	Thiamine metabolism	00730	80%
Blast2go	Metabolic pathways	01100	80%

Source	GOs	Term	Type	Identity
Blast2go	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	80%
Blast2go	ATP binding	GO:0005524	Molecular Function	80%
Blast2go	plastid	GO:0009536	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5AE60

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 17 aas, your sequence is longer than subject: 437 - 388

Fln protein: MAMDWNQQLEQDIERLKAEANRQQLRMVMGSSGITCKDLTELDIKNHILTYDMAEKVVGWAVSRQLQKDAEPVLFNGKLVITAESMQNTLTELLSVQRASPLKKSLKDVTCDNEFEKILISEVIPPDELGVTFDCIGALDNVKEALRELVMLPLQRPELFAKGQLRKPCRGLLLFGPPGTGKTMLAKAVATEAGANFINISMSTVASKWFGEAEKYVKAVFTLANKIAPSVIFIDEVDSMLGRRGKDSEHSAMRKLKNEFMASWDGLRTRDKERVLVLAATNRPFDLDEAVIRRFPRRLMVDLPDAENRVKILRVILVDEDLAPDFNIEELATATDGYSGSDLKSLCTTAAYQRIRELLDQESKEREKAKSEGQPPPLTSKTPELRPISMSDMRQAMEKVRSSVSSDARSILELRQWNEQYGEGGTRKVMTLSYFM*

Protein Length: 438

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTATGTCCCGGTTGGATGATATGAAGGGGAAGGTTCAAAGTCTTCGAGATCTCTCTTCAAGCTTTTTCCTACTAGAATCTATTTACAGCAGCCACAGGATGAAAAC_-_ATGGCCATGGATTGGAACCAACAATTGGAACAAGATATTGAAAGACTAAAGGCAGAAGCCAATAGGCAACAACTTCGCATGGTCATGGGATCTTCAGGCATCACATGTAAAGATCTGACGGAACTTGACATTAAGAACCACATTCTAACTTATGATATGGCAGAAAAGGTGGTAGGATGGGCTGTAAGCCGCCAGTTGCAGAAAGATGCGGAACCAGTTTTATTTAATGGAAAGCTGGTTATAACTGCTGAAAGCATGCAGAATACCCTTACAGAGCTTCTATCTGTGCAACGAGCTTCACCACTTAAAAAATCTTTGAAGGATGTTACATGTGACAATGAGTTTGAGAAGATACTAATATCTGAAGTTATTCCACCGGATGAACTAGGAGTCACGTTTGATTGTATTGGAGCCCTTGACAACGTTAAAGAAGCACTTAGGGAGCTAGTTATGTTGCCATTGCAGCGACCAGAGCTCTTTGCAAAGGGACAATTACGGAAGCCGTGCAGAGGTCTTCTTCTGTTTGGTCCTCCTGGAACTGGAAAAACAATGCTTGCGAAGGCTGTTGCCACAGAAGCAGGGGCAAATTTTATAAATATCTCAATGTCGACAGTTGCATCAAAGTGGTTTGGTGAAGCAGAGAAGTATGTCAAGGCGGTGTTTACTTTAGCTAATAAAATAGCCCCTAGTGTTATATTTATTGATGAGGTGGACAGCATGCTGGGAAGAAGAGGAAAGGACTCTGAGCATTCTGCTATGCGTAAGCTAAAGAATGAATTTATGGCTAGTTGGGATGGTCTCAGGACACGGGATAAAGAACGAGTGCTGGTTCTTGCTGCTACAAACCGTCCATTTGATCTAGATGAAGCAGTCATTCGAAGGTTTCCAAGGAGGTTAATGGTTGATCTCCCAGATGCTGAGAACCGAGTAAAAATCCTCAGGGTCATCCTAGTAGATGAAGACTTGGCACCAGATTTTAATATAGAGGAATTGGCTACTGCCACTGATGGCTACTCGGGAAGTGACTTGAAGAGCTTATGCACGACTGCTGCATATCAACGAATTCGTGAGCTATTAGATCAAGAAAGTAAGGAGAGAGAGAAAGCAAAATCTGAAGGACAGCCTCCACCTCTAACCTCTAAAACACCTGAACTCCGTCCCATAAGTATGTCTGATATGCGACAAGCCATGGAAAAGGTTCGTTCTAGTGTCTCTTCAGATGCTCGAAGTATTCTTGAATTGCGGCAATGGAATGAGCAATATGGAGAAGGTGGAACAAGGAAGGTGATGACTTTAAGTTATTTCATGTGA___AATAAGCTACACCTTTTAAGAGGTAAGAAACATCATGTAATCTGGAGATCATAAATTGTAAATCTTCAACTGGAGCTGATTATGGTACCAGTATTTTGGCAAGTGTTTCACAAGTTCACAGGAGTTTAATTTTCGAACTTCTGGAAGGTGGAAGGTTGATTTCCAATATAATGTCAGTAGGAAATGCGTCATGAAATAAGTGAGATGAGCTTGACTCTAATAAAATGGCTTCTGATCCAAATTAGGAGAAACTTCTAATCATGATGACAGAAAATCTCAAGGAAGTGCATGGCATGTCTGGACTTATTGGTTAACAGGTCAAGGAAATACATTCTACCTACATCAAAACATCTAAAGTAAATTTATTGGCAGGTGAACAGGCACATTTATGCAAAAAATCTTCAAACACATATCTGAATGAGTCACTGATAGGGTTGAAGCCCTAAAGATAATGGTTTACATTCTTTAGCATGAACTTTACACTGTAAGGAATTATATAATTTTGATACCTTTCTCAGTAGAGTTTTACAGTCGCGCACAGATTGAGGTAAACCGCAAAGCTGAATCAAATGATTTCATTGTCGTATTATTTGCCAGATGCCCACTTATGGTGAATTATCTGTACCAGAGCTCTGCTTCTAATCAAGTGTATAAAATAAATGAGATGAAAAATTCCAAATTTTTAGATATAGACATATTCCAATTTCCAATTATGTCATGAAGTAGTCTCAGGTTGTCATCTTTAACAAAGGT

Fln Alignment:

Contig11889___NEFEKILISEVIPPDELGVTFDCIGALDNVKEALRELVMLPLQRPELFAKGQLRKPCRGLLLFGPPGTGKTMLAKAVATEAGANFINISMSTVASKWFGEAEKYVKAVFTLANKIAPSVIFIDEVDSMLGRRGKDSEHSAMRKLKNEFMASWDGLRTRDKERVLVLAATNRPFDLDEAVIRRFPRRLMVDLPDAENRVKILRVILVDEDLAPDFNIEELATATDGYSGSDLKSLCTTAAYQRIRELLDQESKEREKAKSEGQPPPLTSKTPELRPISMSDMRQAMEKVRSS
D5AE60_______________NPYEDVIACDVINPDDIDVTFDSIGGLEKVKQELYELVILPLQRPNLFGHCKLLSPPKGVLLYGPPGTGKTLLAKAIARESGAVFINVRVANLMSKWFGDSQKLVTAVFTLAQKLQPAIIFLDEVDSFLGQR-RSSEQEAFTNMKTEFMALWDGFTTDQTARVTVLAATNRPEELDEAILRRLPRVFEVGMPSCIQRAKILEVILKGENVEDDIDYDYIASLCEGYSGSDLTDLCKQAAYFPIRELLEQE--------KSGQ---LTSETP--RPLKQSDLEKVLSIGKTS

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
957		18	81		0.999994
959			81	18	0.999994
1088	16		83		0.994512
1093		33		66	1.0
1104		50		50	1.0
1152		75		25	0.996473
1647	80			20	0.995493
1649			20	80	0.995493
1819	50			50	1.0
1847	16			83	0.994512
1869	66		33		1.0
1871		16		83	0.994512
1876	16		83		0.994512
2034	83		16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain