SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene11835

Length: 2032 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene11835
CCATTTCTGATGAGATGGCTACTCAAGCCTTTGCAGAGCTGAAGAGCATGGCTTCAATACCTCAAACAATTCCTCTAAATTTCAATCTGCCAAAGATGCCTACAATTCAGTGTTTCTACAGAACTCGTCATCCAATCGTCGTGCACCTTGGCTGTCACTCAAGCTAAATTGGTGCAGGAATTCTACACTTGGCCGGAAGGCCCTTGCAATAAAAACGTTTTCATCTACGATTAGCCATGGTGGGGAACTCACACGCAATCCGAAGGGGCTATTTCTGAAGCATTTCTCGGACTCGGCGTTACAGAAGAAGACGAAGACGACGACGGAGGGGCCTGATTTGCAGCATTTTATCAGACGAGTTCAACCACAAGCTGCAACTCAACTTTCCTCTGATATTCAGTCTTTGGCTGCTGAAAATCCACTAAAAGCACGGATCTACCATGAAACATATGGATGTCAAATGAATATCAATGACATGGAAGTTGTCCTGGCAGTCATGAAAAGTGCTGGATATACAGAGGTTGTAGATACACCAGAGAATGCCGAAATCATCTTCATCAACACATGTGCGATTCGAGAAAATGCTGAACAAAAGGTGTGGCAGAGGCTCAACTATTTCTGGTTTTTAAAGAGAGAGTGGAAAAGCAATGTTAAAAAGGGACGAGCAAAGTCAGTTGTGCCTCCAAAGGTGGTTGTGCTGGGGTGCATGGCAGAACGCTTGAAAGAAAAAATAATTGATTCAGACAAGATGGTTGATGTAGTTTGTGGGCCTGATGCTTACAGGGACTTGCCTCGCTTGCTAGAAGCTGTAGATTATGGTCAAAAGGGAGTTAATACACTTCTGTCCCTTGAAGAAACGTATGCTGATATCAGTCCAGTAAGAATTGCTAGCAATTCAGTTACAGCATTTGTCTCCATAATGCGTGGCTGTAACAATATGTGTTCATTCTGCATTGTACCTTTTACACGAGGGAGAGAGAGGTCACGGCCAGTAGAGTCCATTGTGAGAGAGGTGGGAGAGCTTTGGGAGCAAGGTGTGAAAGAAGTAATGCTTCTTGGTCAGAATGTGAACAGTTATAATGATATCTCTATCCTTGATGGGAATGGTGCATTTCCTACAGGGATCAGTTGGGCTCTTAGTCAAGGCTTTTCCAGCATATGCAAGGTGAAGAATACTGGATTGCGTTTTTCCAATCTATTAGACCGTCTATCTATTGAATTTCCTGAAATGCGGTTCCGATTCACATCTCCCCATCCTAAGGATTTTCCTGATGACTTGTTGTTCCTGATGAAAGATCGATGGAACATCTGTAAAAGCATTCATTTACCAGCACAGAGTGGGAGTACAGCTGTTCTTGAAAGAATGCGACGAGGTTATACACGAGAAGCTTATCTGGATCTTGTAGAAAGAATACGGAATATTATTCCTGATGTTGGCTTAAGCAGTGACTTTATCTGTGGATTCTGTGGTGAAACAGAAGAGGACCATGCTAATACATTGAGCCTCATTAACTCCGTAGGTTACGATATGGCATACTTGTTTGCCTACAGTCTACGGGAGAAAACACATGCTCATCGGAACTATCTAGATGATGTTCCATATAATGTCAAACAAAGAAGGCTGTCAGAGCTCATCAGTGCTTTCCGGGAATCAACAGGTCAGAGGTATGACTCACAGGTTGGTACGACTCAACTTGTGCTTGTTGAGGGACCCAATAAAAGAGCTCCAGAAAGTGAATTAATTGGAAAAAGTGACAGGGGACATAGGATAAGCTTTCGAAATGTGCCCCTAACAGATGTGAGTAACTTGCCACTCCATAGAATGGAGATAGCTGGTCTTGGAGACAGACCTGCAGAGGATTCCTTCAACCCAGTTCTAAATGGTAATAAAAGGAACCCACTTATTGGTGATTATGTTGAAGTTCTTATTAGAAATTCAAGTCGAGCAACATTGTTTGGAGAGGCACTTGGTTTGACAAATTTAACCAGTTTCTATCAGAAGAGTAGAGAAATGGAGAAATTAGCACACATT

Ace file of the UniGene sp_v2.0_unigene11835 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Similar to CDK5 regulatory subunit-associated protein n=1 Tax=Nicotiana tabacum RepID=Q75WU8_TOBAC	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	protein	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	2-alkenal reductase.	EC:1.3.1.74	-	0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	tRNA modification	GO:0006400	Biological Process	81%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	81%
Blast2go	transferase activity	GO:0016740	Molecular Function	81%
Blast2go	4 iron, 4 sulfur cluster binding	GO:0051539	Molecular Function	81%
Blast2go	2-alkenal reductase [NAD(P)] activity	GO:0032440	Molecular Function	81%
Blast2go	mitochondrion	GO:0005739	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Sma3	TRAM domain	IPR002792	-	-
Sma3	Methylthiotransferase	IPR005839	-	-
Sma3	tRNA-i(6)A37 modification enzyme MiaB	IPR006463	-	-
Sma3	Elongator protein 3/MiaB/NifB	IPR006638	-	-
Sma3	Radical SAM	IPR007197	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-
Sma3	Methylthiotransferase, N-terminal	IPR013848	-	-

Full-Lengther Next Prediction

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
558	16			83	0.994512
559	16	83			0.994512
885		25		75	0.996473
886		25	75		0.996473
887		25	75		0.996473
889	75			25	0.996473
911		66		33	0.997452
1045	25	75			0.996473
1126	25		75		0.996473
1182		33		66	0.997452
1607		10	90		0.90298
1610		90		10	0.90298
1626		11		77	0.968132
1627	11			88	0.923564
1759	87	12			0.992554
1762			87	12	0.992554
1793		14	85		0.993533
1794	85	14			0.993533
1795		14	85		0.993533
1796	14			85	0.993533
1801		83		16	0.994512
1884	66			33	1.0
1885		33	66		1.0
1889		66		33	1.0
1890	66		33		1.0
1892		66		33	1.0
1894	66		33		1.0
1895	66			33	1.0
1896			66	33	1.0
1900	40	60			1.0
1902		60		40	1.0
1905	40	60			1.0
1906	40		60		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain