SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene11832

Length: 1229 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene11832

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cyclin d, putative n=1 Tax=Ricinus communis RepID=B9SG00_RICCO	-	-	2.0e-25	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	45%
Blast2go	cyclin d3-2	-	-	2.23947e-31	60%

Source	InterPros	Term	Type	Identity
Sma3	Cyclin, C-terminal	IPR004367	-	-
Sma3		IPR006670	-	-
Sma3	Cyclin, N-terminal	IPR006671	-	-
Sma3	Cyclin-like	IPR013763	-	-
Sma3	Cyclin D	IPR015451	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LR95

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 16 aas, your sequence is shorter than subject: 207 - 368

Fln protein: VVTLAVTHVFENGGLTLCLQVGEAEHVFEPRTIQRMELLLLSALKWRMKAVTPLSYLQYGGHILGLEKQFHGEFIMRSSELAFCTINETRLLKFMPSVIAAAIMLWVAREMEVINLNECEDRLLSRLKVAKGPLQCCYQLLQVSFGQAHVRKRKVCSSLSKPDSPHRVLDAAFSFSTEHSQKSSAKYTVSSPSSSPSVPNKRRITE*

Protein Length: 208

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTGTTTGAAAATGGCGGTCTTACTTTGTGCCTGCAGGTAGGGGAAGCTGAACATGTTTTCGAACCTCGAACTATTCAAAGAATGGAGCTGCTTTTACTGAGTGCACTGAAATGGCGGATGAAGGCAGTGACTCCTCTTTCATATTTGCAATATGGTGGCCACATATTAGGTTTAGAGAAGCAGTTTCATGGAGAGTTTATAATGCGATCTTCTGAGCTTGCTTTCTGCACTATTAATGAGACCAGGCTTTTGAAGTTTATGCCATCTGTAATAGCTGCTGCCATTATGCTATGGGTGGCAAGGGAAATGGAAGTTATAAATCTCAATGAATGCGAGGATCGCTTGCTTTCTCGTTTAAAAGTGGCAAAGGGACCGTTGCAATGCTGTTATCAATTGTTGCAGGTATCGTTTGGCCAGGCTCATGTCCGAAAGCGAAAGGTGTGCAGCAGCCTTTCCAAGCCTGATAGTCCTCATAGGGTTCTGGACGCAGCTTTTAGCTTTAGTACTGAACATTCTCAGAAGTCATCAGCTAAATATACAGTTAGCAGTCCCAGTTCTTCCCCATCTGTACCCAATAAAAGGAGGATTACAGAGTGA___TTCCTTTCACGCTGAAACACAAAACCCCCTACCATATCATAAGCATGGAAGCTTTAAAGGCCTATGTTGGAGTAGTTCTATGAATAAAGGAGTTTGACCTATCAAATTTTTTATGCTGTAGATCAGTGACAATGACAGCCTTTCTATCTTGGTCTGTCAGCTGGAAAGGGACAGTAAGTAAATCATAATTTGTGATGTGGACATTGGAAGCTGCTATATTGACATTGCTATGTAGTGATGGTGCTTGGGAAGAATAATTATCTACACACAGGTTTCGATAAATCGCGGTAGCAGGTTTGAAAACAGGGCGATGCAGGCGACATTTTGGCACTATTGTCGGCCATATCTTTTCTCAGTCCCTTTCGAGTGCCAGAAACTTTTTTCGATGCTTAATTTACTCACAAACCTCGCTAGCAGTGGACTGGACCCCTGGTCATTATGAGTTCCCTTATCTAGGGACCACTATTTTTAATGCCCCTCCAGATTTTCTTCAGCGTGCAATAGTCATTCACGGAGAAAAGTTGTGACAATGTATTCAATGTAAAAATTTGAAAGATGAGATTTTCAGTCAGTACTCCTTGTGACCTGAATTTATAAATGTAATGGA

Fln Alignment:

Contig11832___LTLCLQVGEAEHVFEPRTIQRMELLLLSALKWRMKAVTPLSYLQYGGHILGLEKQFHGEFIMRSSELAFCTINETRLLKFMPSVIAAAIMLWVAREMEVINLNECEDRLLSRLKVAKGPLQCCYQLL----QVSFGQAHVRKRKVCSSLS--KPDSPHRVLDAAFSFST
B8LR95_______________LLLDFQVEEAKYLFESRTIQRMELLVLSTLEWRMSPVTPLSYIDHASRMIGLENHHCWIFTMRCKEILLNTLRDAKFLGFLPSVVAAAIMLHVIKEIELVNPYQYENRLLSAMKVNKDMCERCIGLLIAPESSSLGSFSLGLKRKSSSVNIPIPGSPDGVLDATFSCSS

SNPs (tot: 57)

Position	A %	C %	G %	T %	Probability
52	50		50		1.0
53		50		50	1.0
57			50	50	1.0
60		50		50	1.0
61		50		50	1.0
64			50	50	1.0
173	83		16		0.994512
175	83	16			0.994512
176			16	83	0.994512
178			16	83	0.994512
179	16		83		0.994512
181	83	16			0.994512
190			83	16	0.994512
193	83			16	0.994512
537	87		12		0.992554
547	88			11	0.923564
548			11	88	0.923564
550		88	11		0.923564
565	88			11	0.923564
646		85		14	0.993533
647		14		85	0.993533
649	83			16	0.994512
650	83		16		0.994512
655	75			25	0.996473
656	75			25	0.996473
657	75		25		0.996473
658	75		25		0.996473
660		75		25	0.996473
661		75	25		0.996473
662		75		25	0.996473
687			20	80	0.995493
689		20		80	0.995493
690	80		20		0.995493
691	80			20	0.995493
694	20		80		0.995493
698	80			20	0.995493
699			20	80	0.995493
701		20		80	0.995493
704			80	20	0.995493
707		20	80		0.995493
709	80	20			0.995493
710	20		80		0.995493
749		14		85	0.993533
751		88		11	0.923564
752		11		88	0.923564
758		11		88	0.923564
760	88			11	0.923564
764	88		11		0.923564
766	88			11	0.923564
767	88		11		0.923564
769		11	88		0.923564
772	88			11	0.923564
775	11	88			0.923564
952			88	11	0.999937
1120		14		85	0.993533
1121	14			85	0.993533
1162	83	16			0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain