SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene11804

Length: 1471 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene11804 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam07002, Copine, Copine	-	-	6.99949e-42	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Blast2go	e3 ubiquitin-protein ligase rglg2	-	-	0.0	88%

Source	GOs	Term	Type	e value	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	0.0	88%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	0.0	88%

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Ribulose bisphosphate carboxylase, large subunit, C-terminal	IPR000685	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	von Willebrand factor, type A	IPR002035	-	-
Sma3	Copine	IPR010734	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUP8

Fln msg: Overlapping hits, possible frame ERROR between 840 and 836, Distance to subject end: 74 aas, W1: There is no M at the beginning, your sequence is shorter than subject: 397 - 423

Fln protein: YSRRSNFLGFCLCFLRQVYLQFIRVCGEYYVPYLQNLAKTQNLGNGRQTFKSIRPRRYSSSSYGPSPAWDSSSYGPSPAVPSETYAQPAQPATKQKLQRRYSRIADNYNSLDEVTAALAQAGLESSNLIVGIDFTKSNEWTGARSFNRRSLHHIGDTPNPYEQAISIIGRTLSVFDEDNLIPCFxxxGDALTHDQSVFSFYPDDRLCNGFEEALRRYREIVPHLRLAGPTSFAPIIEAAIRIVEQSGGQYHVLLIIADGQVTRSVDTDNGQLSTQEQNTVNAIVEASEYPLSIVLVGVGDGPWDMMRQFDDNIPARAFDNFQFVNFTEIMSKNVAQSRKETEFALASLMEIPSQYKATLDLQILGRRRGKMPDRSPLPPALGNDNYAARQQYQRADS

Protein Length: 398

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTGTAAGTTTAATGAATTTTTAAAGATGGTAAACGTTTTCGGCGAGGGATTATTTTATGTTGTTTCCGAGCTCCTGCTGTCTTAGCCCTTTGTGAAGTGTATATCTGATTATAGCGTGGATCCTCGATTTTGAAAGAGACTTTCTAAGGCATTGAACCGGGAATCATAACAGGAGCTTCACTGCAACTCCGCGTACTTTGTATATCAGTGGAAGGGTTTGGACGGAGAAAGTTCTCTTGCGCTGCCTTCAGAGCGTAATATTCTAGAAGATCCAATTTCCTGGGATTCTGTTTATGTTTTCTGAGGCAAGTTTATCTTCAATTCATTAGAGTTTGTGGAGAATATTATGTGCCATACCTGCAAAACCTTGCAAAAACTCAAAATCTAGGCAATGGGAGGCAGACATTCAAAAGTATTCGCCCAAGGCGTTATAGTTCTTCTTCATATGGCCCTTCACCAGCATGGGATTCTTCATCCTATGGTCCTTCACCAGCAGTTCCATCGGAAACTTATGCACAACCAGCACAACCGGCGACTAAACAGAAGTTGCAAAGGAGATACTCCCGAATCGCTGACAATTACAATTCACTTGATGAGGTGACTGCAGCTCTCGCACAAGCTGGCCTCGAATCTTCCAATTTGATTGTAGGGATTGACTTCACTAAGAGCAATGAGTGGACAGGTGCAAGGTCTTTTAATCGCCGAAGCTTGCACCACATTGGAGATACTCCAAACCCTTATGAACAAGCGATTTCGATAATTGGGAGGACCTTATCTGTATTTGACGAAGACAACTTGATCCCTTGTTTTxxxxxxxxxGGGGATGCTTTGACACATGATCAAAGTGTGTTTAGTTTCTATCCAGATGATAGGTTATGCAATGGATTTGAAGAAGCGTTGAGACGCTACAGGGAGATAGTCCCACATCTTCGACTGGCTGGGCCAACATCTTTTGCCCCAATTATTGAAGCAGCAATCCGTATTGTGGAACAGAGTGGTGGGCAGTACCATGTTCTCTTGATAATTGCAGATGGACAGGTAACAAGAAGTGTTGACACTGACAATGGACAACTGAGTACACAAGAACAGAATACAGTCAATGCAATAGTGGAAGCCAGTGAATATCCACTATCAATTGTCTTAGTTGGAGTGGGAGATGGGCCTTGGGACATGATGCGGCAGTTTGATGATAATATTCCAGCTCGAGCATTTGACAACTTCCAGTTTGTGAACTTTACAGAGATTATGTCGAAGAATGTTGCTCAATCTAGGAAGGAGACTGAGTTTGCCCTTGCATCACTTATGGAAATACCATCTCAGTACAAGGCCACACTGGATCTTCAAATACTGGGTCGTCGCAGAGGCAAGATGCCTGATAGGTCTCCTCTTCCACCAGCACTTGGCAATGATAATTATGCTGCTAGGCAACAATATCAGCGTGCAGACAGT

Fln Alignment:

Contig11804___YGPSPAVPSETYAQPAQPATKQKLQRRYSRIADNYNSLDEVTAALAQAGLESSNLIVGIDFTKSNEWTGARSFNRRSLHHIGDTPNPYEQAISIIGRTLSVFDEDNLIPCFxxGDALTHDQSVFSFYPDDRLCNGFEEALRRYREIVPHLRLAGPTSFAPIIEAAIRIVEQSGGQYHVLLIIADGQVTRSVDTDNGQLSTQEQNTVNAIVEASEYPLSIVLVGVGDGPWDMMRQFDDNIPARAFDNFQFVNFTEIMSKNVAQSRKETEFALASLMEIPSQYKATLDLQILGRRRGKMPDRSPLPPALGNDNYAARQQYQRADS
A9NUP8_______________YGPSSEVPPETYSQPA---AKQKLQRRYSRIADNYNSLDEVTAALAQAGLESSNLIVGIDFTKSNEWTGARSFNRRSLHHIGDTPNPYEQAISIIGRTLSAFDEDNLIPCFxxGDASTHDQHVFSFYPDDRLCNGFEEALRRYREIVPHLRLAGPTSFAPMIEGAIRIVEQSGGQYHVLLIIADGQVTRSVDIENGQLSTQEQNTVNAIVEASEYPLSIVLVGVGDGPWDMMRQFDDNIPARAFDNFQFVNFTEIMSKNVPQSRKETEFALASLMEIPSQYKATLDLQILGRRRGKMPDRFPLPPPLGNDNYAARQQYQRADS

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1193	66		33		0.997452
1210		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain