SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene11787

Length: 542 nt

Origin of reads: Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene11787
GCAGGTGTTAACACTCCAGGTAATAATCCAGATACAGTAAAGGAACCCCATATTGGCTGGATGATTGGATATCTGCTTCTAGTTACATTCGTTGGCATTTTAGCACTGGTGCCTCTCCGAAAGGTCCTTATCATTGACTACAGACTGACTTATCCCAGTGGAACAGCAACAGCTGTGTTAATTAATGGCTTCCATACACCGCATACAGATAAAGTTGCGAGGAAGCAAGTTCGAAGCTTTGGAAAATATTTTACATTCAGTTTTCTTTGGGGACTTTTCCAATGGTTCTTCGCCGCTGGAGATGATTGCGGCTTCGTAAAATTCCCCTTCTTCGGATTGAAAGCTCTGGAGCAGAGGTTTTACTTCGACTTCAATATGATATATGTGGGGGCAGGGGATGATATGCCCCCGTCTGGTTACCGTCTCTATGCTTATTGGAGGGATCATTTCATGGGGTGTTATGTGGCCACTTATCAGCAAACGTGAAGGGGACTGGTACCCTCATGGTATTCCGGAGAGTAGTATCAAGGGCATTAATGGCT

Ace file of the UniGene sp_v2.0_unigene11787 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Probable metal-nicotianamine transporter YSL11 n=3 Tax=Oryza sativa RepID=YSL11_ORYSJ	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	metal-nicotianamine transporter ysl3	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	response to nematode	GO:0009624	Biological Process	80%
Blast2go	oligopeptide transport	GO:0006857	Biological Process	80%
Blast2go	transmembrane transport	GO:0055085	Biological Process	80%
Blast2go	seed development	GO:0048316	Biological Process	80%
Blast2go	oligopeptide transporter activity	GO:0015198	Molecular Function	80%
Blast2go	iron-nicotianamine transmembrane transporter activity	GO:0051980	Molecular Function	80%
Blast2go	plasma membrane	GO:0005886	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Sma3	Ets	IPR000418	-	-
Sma3	Oligopeptide transporter OPT superfamily	IPR004813	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AA59

Fln msg: Overlapping hits, possible frame ERROR between 396 and 389, Distance to subject end: 365 aas, your sequence is shorter than subject: 181 - 625

Fln protein: AGVNTPGNNPDTVKEPHIGWMIGYLLLVTFVGILALVPLRKVLIIDYRLTYPSGTATAVLINGFHTPHTDKVARKQVRSFGKYFTFSFLWGLFQWFFAAGDDCGFVKFPFFGLKALEQRFYFDFNMIYVxxxxMICPRLVTVSMLIGGIISWGVMWPLISKREGDWYPHGIPESSIKGING

Protein Length: 182

Fln nts: GCAGGTGTTAACACTCCAGGTAATAATCCAGATACAGTAAAGGAACCCCATATTGGCTGGATGATTGGATATCTGCTTCTAGTTACATTCGTTGGCATTTTAGCACTGGTGCCTCTCCGAAAGGTCCTTATCATTGACTACAGACTGACTTATCCCAGTGGAACAGCAACAGCTGTGTTAATTAATGGCTTCCATACACCGCATACAGATAAAGTTGCGAGGAAGCAAGTTCGAAGCTTTGGAAAATATTTTACATTCAGTTTTCTTTGGGGACTTTTCCAATGGTTCTTCGCCGCTGGAGATGATTGCGGCTTCGTAAAATTCCCCTTCTTCGGATTGAAAGCTCTGGAGCAGAGGTTTTACTTCGACTTCAATATGATATATGTGxxxxxxxxxxxxATGATATGCCCCCGTCTGGTTACCGTCTCTATGCTTATTGGAGGGATCATTTCATGGGGTGTTATGTGGCCACTTATCAGCAAACGTGAAGGGGACTGGTACCCTCATGGTATTCCGGAGAGTAGTATCAAGGGCATTAATGGCT

Fln Alignment:

Contig11787___AGVNTPGNNPDTVKEPHIGWMIGYLLLVTFVGILALVPLRKVLIIDYRLTYPSGTATAVLINGFHTPHTDKVARKQVRSFGKYFTFSFLWGLFQWFFAAGDDCGFVKFPFFGLKALEQRFYFDFNMIYVxxxMICPRLVTVSMLIGGIISWGVMWPLISKREGDWYPHGIPESSIKGING
D5AA59_______________AGVNTPGNTPDTVKEPTIAWMIGFLFLVTFVGIIALVPLRKVLIIDYKLTYPSGTATAVLINGFHTPHTDKVARKQVRCFGKYFTFSFFWGFFQWFFTGGDDCGFENLPFFGLNARKQRFYFDFNMIYVxxxMICPHLVNISMLIGGIISWGIMWPLISKREGDWYPEGLPDSSIKGING

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
371			85	14	0.993533
372		83		16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain