SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene11779

Length: 682 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene11779

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DNA-directed RNA polymerase n=6 Tax=core eudicotyledons RepID=B9SXC0_RICCO	-	-	76%
FL-Next	sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress).	-	-	76%
Blast2go	dna-directed rna polymerase ii subunit rpb1-like	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	DNA-directed RNA polymerase.	EC:2.7.7.6	-	0.0	87%

Source	KEGGs	Term	Type	Identity
Blast2go	Purine metabolism	00230		87%
Blast2go	Pyrimidine metabolism	00240		87%
Blast2go	Metabolic pathways	01100		87%
Blast2go	Transferases, Glycosyltransferases, Hexosyltransferases.	EC:2.4.1.-	-	87%

Source	KEGGs	Term	Identity
Blast2go	Fructose and mannose metabolism	00051	87%
Blast2go	N-Glycan biosynthesis	00510	87%
Blast2go	Mucin type O-Glycan biosynthesis	00512	87%
Blast2go	Various types of N-glycan biosynthesis	00513	87%
Blast2go	Other types of O-glycan biosynthesis	00514	87%
Blast2go	Biosynthesis of 12-, 14- and 16-membered macrolides	00522	87%
Blast2go	Glycosaminoglycan biosynthesis - keratan sulfate	00533	87%
Blast2go	Lipopolysaccharide biosynthesis	00540	87%
Blast2go	Peptidoglycan biosynthesis	00550	87%
Blast2go	Glycerolipid metabolism	00561	87%
Blast2go	Glycosylphosphatidylinositol(GPI)-anchor biosynthesis	00563	87%
Blast2go	Sphingolipid metabolism	00600	87%
Blast2go	Glycosphingolipid biosynthesis - lacto and neolacto series	00601	87%
Blast2go	Glycosphingolipid biosynthesis - globo series	00603	87%
Blast2go	Glycosphingolipid biosynthesis - ganglio series	00604	87%
Blast2go	Carotenoid biosynthesis	00906	87%
Blast2go	Zeatin biosynthesis	00908	87%
Blast2go	Flavonoid biosynthesis	00941	87%
Blast2go	Anthocyanin biosynthesis	00942	87%
Blast2go	Flavone and flavonol biosynthesis	00944	87%
Blast2go	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945	87%
Blast2go	Betalain biosynthesis	00965	87%
Blast2go	Biosynthesis of type II polyketide products	01057	87%
Blast2go	Metabolic pathways	01100	87%
Blast2go	Biosynthesis of secondary metabolites	01110	87%

Source	GOs	Term	Type	Identity
Blast2go	transcription from RNA polymerase II promoter	GO:0006366	Biological Process	87%
Blast2go	DNA-directed RNA polymerase activity	GO:0003899	Molecular Function	87%
Blast2go	DNA binding	GO:0003677	Molecular Function	87%
Blast2go	protein binding	GO:0005515	Molecular Function	87%
Blast2go	transferase activity, transferring hexosyl groups	GO:0016758	Molecular Function	87%
Blast2go	vacuole	GO:0005773	Cellular Component	87%
Blast2go	DNA-directed RNA polymerase II, core complex	GO:0005665	Cellular Component	87%
Blast2go	chloroplast	GO:0009507	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Sma3	RNA polymerase II, heptapeptide repeat, eukaryotic	IPR000684	-	-
Sma3	RNA polymerase, alpha subunit	IPR000722	-	-
Sma3	RNA polymerase, N-terminal	IPR006592	-	-
Sma3	RNA polymerase Rpb1, domain 3	IPR007066	-	-
Sma3	RNA polymerase Rpb1, domain 7	IPR007073	-	-
Sma3	RNA polymerase Rpb1, domain 6	IPR007075	-	-
Sma3	RNA polymerase Rpb1, domain 1	IPR007080	-	-
Sma3	RNA polymerase Rpb1, domain 5	IPR007081	-	-
Sma3	RNA polymerase Rpb1, domain 4	IPR007083	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-

Full-Lengther Next Prediction

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
121	77		22		0.999999
226		16	83		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain