SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene11775

Length: 992 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene11775

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	COP1-interacting protein 7 (CIP7)-like [Oryza sativa Japonica Group] dbj\|BAC21482.1\| COP1-interacting protein 7 (CIP7)-like [Oryza sativa Japonica Group]	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	62%
Blast2go	uncharacterized protein	-	-	64%

Source	InterPros	Term	Type	Identity
Sma3	Alpha carbonic anhydrase	IPR001148	-	-
Sma3	WW/Rsp5/WWP	IPR001202	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Carbonic anhydrase, alpha-class, conserved site	IPR018338	-	-
Sma3		IPR018340	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: F6HXQ3

Fln msg: Distance to subject end: 939 aas, your sequence is shorter than subject: 321 - 1257

Fln protein: MKADTRLDYAAFQLSPKRTRCELFVSSGGETEKLASGLLKPFVTHLRAAEEQVGRAGRLIKLETDEIQNDAPWFTKGTLERFVRFVSTPEVLELVNTVDTEMSQLEAARNFQNTLYSKGAGEQASISGSDVGTLGAGSKSSETEAADTSKKELLRAIDVRLMALQQELSMAFARASAAGFAIEHMAGLIVFADHFGATRLKDACSKFMSLCQKRQDLCPWRDDADTRSSGSDMSIENGTDGELAFDASSDPLSKKGDKPSAYWSYAQGEGRDMGYGSQTSASTGARSQEGLQCMKPSHSRAQSIGSHESISSSTGGANVIN

Protein Length: 322

Fln nts: CCCGCGAGAGCTCCGGTACGAGAGGAG_-_ATGAAGGCGGATACGCGCCTAGATTATGCTGCTTTTCAGCTaTCCCCCAAGCGTACAAGGTGCGAGTTGTTCGTTTCTAGCGGTGGCGAAACGGAGAAGCTCGCGTCGGGGCTTCTGAAGCCGTTCGTTACGCATTTGCGAGCAGCGGAAGAGCAGGTTGGGAGAGCCGGGCGTTTAATCAAACTCGAAACAGATGAAATTCAAAATGATGCCCCCTGGTTCACCAAAGGCACCTTGGAAAGATTTGTCCGGTTCGTTAGCACTCCCGAGGTGCTGGAGCTGGTCAACACAGTTGACACCGAGATGTCTCAGCTGGAAGCTGCCAGAAACTTCCAGAATACTCTGTATTCAAAGGGAGCTGGCGAACAGGCTTCTATTTCGGGGTCAGATGTCGGTACACTGGGAGCAGGGTCCAAGTCAAGTGAAACAGAAGCAGCAGATACATCAAAGAAAGAATTGTTGAGAGCCATAGATGTGCGGCTCATGGCATTACAACAAGAGTTAAGCATGGCCTTTGCTAGAGCTTCTGCTGCTGGTTTTGCAATAGAACATATGGCGGGTCTTATTGTATTTGCAGATCACTTTGGAGCAACTCGTTTAAAAGATGCGTGTAGCAAGTTTATGTCCCTGTGTCAAAAACGACAGGACTTGTGCCCATGGAGAGATGATGCAGACACCCGATCTTCAGGATCTGACATGTCCATCGAGAATGGTACGGATGGAGAGTTGGCATTTGATGCTTCATCTGATCCTTTATCCAAGAAAGGTGATAAACCTTCTGCCTATTGGTCTTATGCCCAAGGTGAAGGCAGAGACATGGGGTATGGAAGTCAAACTTCAGCTTCTACTGGAGCACGGTCTCAGGAGGGTCTCCAATGCATGAAACCATCTCATTCTCGAGCACAATCTATCGGTAGTCATGAAAGCATTTCCTCTTCGACTGGTGGGGCTAATGTCATCAACAG

Fln Alignment:

Contig11775___MKADTRLDYAAFQLSPKRTRCELFVSSGGETEKLASGLLKPFVTHLRAAEEQVGRAGRLIKLETDEIQNDAPWFTKGTLERFVRFVSTPEVLELVNTVDTEMSQLEAARNFQNTLYSKGAGEQ-ASISGSDVGTLGAGSKSSETEAADTSKKELLRAIDVRLMALQQELSMXXXXXXXXXXXIEHMAGLIVFADHFGATRLKDACSKFMSLCQKRQDL---CPWRDDADTR----SSGSDMSIE
F6HXQ3_______________MKSDGALDYAVFQLSPKRSRCELFVSRDGNTEKLASGLVKPFVTHLKVVEEQVALAVQSIKLEVEKYKNADLWFTKGTLERFVRFVSTPEVLELVNTFDAEVSQLEAAR----TIYSQGVGDPVSSASGGDV--------TGSVAAADATKKELLRAIDVRLVAVRQDLTMACSRASAAGFNPETVAELQIFSDRFGAHRLSEACSKFFSLCQRRPDLISTATWKGGADDRAVRSSSGSDMSID

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
597	85	14			0.993533
599			28	71	1.0
600			14	85	0.993533
604		14	85		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain