SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene11752

Length: 707 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene11752

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	contains similarity to E. coli cation transport protein ChaC (GB:D90756) [Arabidopsis thaliana]	-	-	1.0e-33	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Blast2go	like family protein	-	-	2.74795e-42	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Glycosylases, Glycosidases, i.e. enzymes hydrolyzing O- and S-glycosyl compounds.	EC:3.2.1.-	-	2.74795e-42	87%

Source	KEGGs	Term	e value	Identity
Blast2go	Ascorbate and aldarate metabolism	00053	2.74795e-42	87%
Blast2go	Ubiquinone and other terpenoid-quinone biosynthesis	00130	2.74795e-42	87%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	2.74795e-42	87%
Blast2go	Glycosaminoglycan degradation	00531	2.74795e-42	87%
Blast2go	Metabolic pathways	01100	2.74795e-42	87%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to lead ion	GO:0010288	Biological Process	2.74795e-42	87%
Blast2go	carbohydrate metabolic process	GO:0005975	Biological Process	2.74795e-42	87%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	2.74795e-42	87%
Blast2go	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	2.74795e-42	87%

Source	InterPros	Term	Type	e value	Identity
Sma3	ChaC-like protein	IPR006840	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
258	16			83	0.994512
259	16			83	0.994512
262			83	16	0.994512
336		87		12	0.992554
337		85	14		0.993533
338	85			14	0.993533
363	16	83			0.994512
364		16		83	0.994512
365	16		83		0.994512
366		83		16	0.994512
447		75	25		0.996473
448	75			25	0.996473
491	85		14		0.993533
506	14		85		0.993533
507		14	85		0.993533
509	85			14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain