SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene11686

Length: 761 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene11686 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Histone H2B.10 n=5 Tax=Arabidopsis RepID=H2B10_ARATH	-	-	9.99995e-41	96%
FL-Next	tr=Putative histone H4; Pinus pinaster (Maritime pine).	-	-	0.0	98%
Blast2go	histone h2b like protein	-	-	0.0	98%

Source	GOs	Term	Type	Identity
Blast2go	nucleosome assembly	GO:0006334	Biological Process	98%
Blast2go	DNA binding	GO:0003677	Molecular Function	98%
Blast2go	protein binding	GO:0005515	Molecular Function	98%
Blast2go	nucleolus	GO:0005730	Cellular Component	98%
Blast2go	nucleosome	GO:0000786	Cellular Component	98%

Source	InterPros	Term	Type	Identity
Sma3	Histone H2B	IPR000558	-	-
Sma3	Histone core	IPR007125	-	-
Sma3	Histone-fold	IPR009072	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-

Full-Lengther Next Prediction

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
250		62		37	1.0
328		75		25	1.0
331	12	87			0.992554
335	75	25			1.0
340	62			37	1.0
341	12	25		62	1.0
343	62			12	1.0
346		75	25		1.0
349			25	75	1.0
402	12		87		0.992554
408	28	57			1.0
412	16			66	0.988813
415	83		16		0.994512
473	50		50		1.0
586	60		40		1.0
609	83	16			0.994512
610	83	16			0.994512
611	83	16			0.994512
612	16	83			0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain