SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene11670

Length: 1577 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene11670 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	type-B response regulator [Catharanthus roseus]	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	49%
Blast2go	type-b response regulator	-	-	71%

Source	GOs	Term	Type	Identity
Blast2go	two-component signal transduction system (phosphorelay)	GO:0000160	Biological Process	71%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	71%
Blast2go	DNA binding	GO:0003677	Molecular Function	71%
Blast2go	two-component response regulator activity	GO:0000156	Molecular Function	71%
Blast2go	nucleus	GO:0005634	Cellular Component	71%

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Glycoside hydrolase, family 16	IPR000757	-	-
Sma3	Signal transduction response regulator, receiver domain	IPR001789	-	-
Sma3	Myb DNA-binding domain, plants	IPR006447	-	-
Sma3		IPR012287	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3		IPR014778	-	-
Sma3	Response regulator, plant B-type	IPR017053	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9D6

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 130 aas, your sequence is shorter than subject: 431 - 465

Fln protein: MVMMAAHDSVTGTMGNSYGGGKTDHQFPAGLRVLVVDDDPTCLKILDKMLKRCLYQVTTCCRATAALSMLRENKGAFDLVISDVYMPDMDGFKLLEQVGLEMDLPVIMMSADGGTSTVMKGIKHGACDYLIKPIRLEELKNIWQHVIRKKRNEPKDFDLSGSFEDNDRHSFDYASSVNEGTDGNWKLLKKRKEAKEEEDDGEEDNDDPSASKKPRVVWSVELHQQFVNAVNQLGIDKAVPKRILELMHVQGLTRENVASHLQKYRLYLKRLSGVAQQQSGMNSSFGGTTEAGVGPMGLLGRLDLQRLAASGQISPQALVTLPAELLGQVNPNNGLGLPNIDRTLLLQAAFHGVNSNPLNRGKFGQPLMNSQGNLLQGLPRSIELKQFSQPQQHIPSFGNLGLPTNDTSAGFSMLQQQHNTGAELAVWIVG*

Protein Length: 432

Fln nts: ATGGGGATCGTCGTGACCTTGGCTGTCACTCAATTTTTTGCTATTGTTGTTGCAGCTGCTTTTGATTACCAGCTATGCATCCATTGCAGCCAGTCAGAGGAAGGATATAGCAGCCAGGCAGTACCTACCCCTACCAATGGCATGTATTTCTGGTTGGTTGACAATAGCAAGAGTACTTTGTTAGATAGATTCACAGACACAGACAGATCCTCCTCCTCTGGAACTCGGGCATGTGAGGAGGGTGGGTCTGAAGGAACAGGACAAGCGAA_-_ATGGTGATGATGGCTGCACACGACTCTGTGACCGGCACCATGGGTAACAGCTATGGAGGTGGGAAAACAGATCATCAGTTCCCTGCAGGGCTCAGAGTACTAGTGGTTGATGACGACCCTACATGCCTGAAGATCCTTGATAAAATGCTTAAGAGGTGCCTCTACCAAGTTACAACATGTTGTCGTGCTACAGCTGCATTATCAATGCTTCGAGAGAACAAAGGTGCATTTGACCTTGTCATAAGTGATGTTTATATGCCAGATATGGATGGCTTCAAGCTCCTTGAGCAAGTTGGACTGGAGATGGACTTGCCAGTCATCATGATGTCAGCAGATGGAGGAACAAGTACAGTTATGAAAGGAATCAAGCATGGGGCTTGTGATTACTTGATAAAACCTATACGCCTAGAGGAACTTAAAAACATATGGCAGCATGTCATTAGAAAAAAAAGGAATGAGCCAAAGGATTTTGATCTTTCTGGTAGTTTTGAAGACAATGATAGGCATAGTTTTGATTATGCTTCCTCAGTAAATGAAGGAACAGATGGTAATTGGAAACTTCTAAAAAAGAGGAAGGAAGCCAAGGAGGAGGAAGATGATGGAGAAGAGGACAATGATGATCCATCTGCCTCAAAGAAACCACGGGTGGTCTGGTCTGTAGAGCTCCATCAACAATTTGTCAACGCTGTGAATCAGCTGGGAATTGATAAGGCTGTTCCCAAGCGGATACTTGAATTGATGCATGTTCAAGGGCTTACGAGGGAGAATGTTGCAAGCCACCTGCAGAAATATAGGCTATATCTGAAAAGGTTAAGTGGAGTGGCACAACAGCAAAGTGGAATGAACTCTTCTTTTGGGGGAACTACAGAAGCAGGTGTTGGACCTATGGGTTTACTTGGAAGGCTGGATCTTCAAAGGCTTGCGGCATCAGGTCAAATATCACCTCAAGCACTGGTGACATTACCAGCTGAACTTCTTGGACAAGTGAATCCAAACAATGGGTTGGGCCTGCCAAACATTGATCGGACACTGCTTTTACAAGCAGCATTTCATGGTGTAAACTCTAATCCTTTAAATAGAGGGAAATTTGGGCAACCATTGATGAACAGTCAGGGAAATTTACTTCAGGGACTCCCGAGAAGCATAGAGCTGAAGCAATTTTCCCAGCCACAGCAACATATTCCTTCCTTTGGAAATTTGGGTTTACCGACCAATGATACATCTGCAGGATTTTCTATGCTGCAACAGCAACACAATACAGGTGCAGAATTGGCAGTGTGGATTGTGGGATAAACAACAATGGAGCAT

Fln Alignment:

Contig11670___MMSADGGTSTVMKGIKHGACDYLIKPIRLEELKNIWQHVIRKKRNEPKDFDLSGSFEDNDRHSFDYASSVN----EGTDGNWXXXXXXXXXXXXXXXXXXXXXDPSASKKPRVVWSVELHQQFVNAVNQLGIDKAVPKRILELMHVQGLTRENVASHLQKYRLYLKRLSG-------VAQQQSGMNSSFGGTTEAGVGPMGL
D5A9D6_______________VMSTNGDTSVVMKGITHGACDYFIKPIRIEELRNIWQHVVRRRGRESLKDDLG---ECEDREASDSPETTSKKRKDTSSGDFSDEVIDDI---------------SSLKRARVHWTVQLHQQFVVAVNQLGIDKAVPKKIVEIMKVQGLSRENVASHLQKYRLYLKRLSGAISEPYPVASFQAADDSVSGGMMKLQQGEKGV

SNPs (tot: 76)

Position	A %	C %	G %	T %	Probability
42	33			66	0.997452
43	33	66			0.997452
110		75		25	0.996473
299	16		83		0.994512
302			83	16	0.994512
303			83	16	0.994512
337	83			16	0.994512
339			16	83	0.994512
341		85	14		0.993533
345	14			85	0.993533
347		14	85		0.993533
348		14		85	0.993533
351			14	85	0.993533
357		85	14		0.993533
466		16		83	0.994512
467		16		83	0.994512
627	12		87		0.992554
628	12			87	0.992554
632		87		12	0.992554
665		83		16	0.994512
666		83	16		0.994512
667	16	83			0.994512
671	16		83		0.994512
672		16		83	0.994512
673	16			83	0.994512
674			16	83	0.994512
676		11		88	0.923564
677	11			88	0.923564
678	22			77	0.999999
682			88	11	0.923564
684	88			11	0.923564
687		11	11	77	0.968132
688			88	11	0.923564
694		12		87	0.992554
697	12			87	0.992554
698			12	87	0.992554
703	12			87	0.992554
705			12	87	0.992554
706	12			87	0.992554
708			12	87	0.992554
1295		87		12	0.992554
1445			88	11	0.923564
1450			88	11	0.923564
1452	11		88		0.923564
1453		11		88	0.923564
1456		11	88		0.923564
1457		11		88	0.923564
1459	11	88			0.923564
1460			11	88	0.923564
1462		88		11	0.923564
1464	11			88	0.923564
1465		11	88		0.923564
1467	11	88			0.923564
1468		11		88	0.923564
1516		87		12	0.992554
1517	87		12		0.992554
1519	87		12		0.992554
1520	87			12	0.992554
1521	12		87		0.992554
1532		85	14		0.993533
1533	85		14		0.993533
1534	85			14	0.993533
1537	85	14			0.993533
1538			14	85	0.993533
1545	66			33	1.0
1548	16			83	0.994512
1549			33	66	1.0
1556	33	66			1.0
1557	66			33	1.0
1559		66	33		1.0
1560	33	66			1.0
1561	66			33	1.0
1563			66	33	1.0
1569			66	33	1.0
1570	66		33		1.0
1572	33		66		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain