SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene11618

Length: 846 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene11618 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	64%
Blast2go	urea active transporter-like protein	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	81%
Blast2go	sodium ion transport	GO:0006814	Biological Process	81%
Blast2go	cellular response to nitrogen starvation	GO:0006995	Biological Process	81%
Blast2go	solute:sodium symporter activity	GO:0015370	Molecular Function	81%
Blast2go	urea transmembrane transporter activity	GO:0015204	Molecular Function	81%
Blast2go	plasma membrane	GO:0005886	Cellular Component	81%
Blast2go	integral to membrane	GO:0016021	Cellular Component	81%

Source	InterPros	Term	Type	e value	Identity
Sma3	Sodium/solute symporter	IPR001734	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
389		66	33		0.997452
391	66		33		0.997452
392		66	33		0.997452
420		33		66	0.997452
432	33		66		0.997452
789		11	88		0.923564
792	85	14			0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain