SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene11610

Length: 1051 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene11610 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ADP-ribosylation factor GTPase-activating protein AGD4 n=2 Tax=Arabidopsis RepID=AGD4_ARATH	-	-	2.0e-29	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	31%
Blast2go	arf-gap domain 4	-	-	2.44904e-38	72%

Source	ECs	Term	Type	e value	Identity
Blast2go	LL-diaminopimelate aminotransferase.	EC:2.6.1.83	-	2.44904e-38	72%

Source	KEGGs	Term	e value	Identity
Blast2go	Lysine biosynthesis	00300	2.44904e-38	72%
Blast2go	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	2.44904e-38	72%
Blast2go	Biosynthesis of secondary metabolites	01110	2.44904e-38	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	lysine biosynthetic process via diaminopimelate	GO:0009089	Biological Process	2.44904e-38	72%
Blast2go	systemic acquired resistance, salicylic acid mediated signaling pathway	GO:0009862	Biological Process	2.44904e-38	72%
Blast2go	regulation of ARF GTPase activity	GO:0032312	Biological Process	2.44904e-38	72%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	2.44904e-38	72%
Blast2go	L,L-diaminopimelate aminotransferase activity	GO:0010285	Molecular Function	2.44904e-38	72%
Blast2go	copper ion binding	GO:0005507	Molecular Function	2.44904e-38	72%
Blast2go	ARF GTPase activator activity	GO:0008060	Molecular Function	2.44904e-38	72%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	2.44904e-38	72%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Arf GTPase activating protein	IPR001164	-	-
Sma3	Pleckstrin homology domain	IPR001849	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	BAR domain	IPR004148	-	-
Sma3	Pleckstrin homology-like domain	IPR011993	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
328	80		20		0.995493
329		80		20	0.995493
375		80		20	0.995493
458	88			11	0.923564
587	80		20		0.999996
589		20		80	0.999996
592	75	25			1.0
595	75		25		1.0
597			75	25	1.0
599	20			80	0.999996
600		20		80	0.999996
601			20	80	0.999996
602	20		80		0.999996
603		20	80		0.999996
620		12		75	0.975346
621		75		25	1.0
682	80		20		0.995493
683	20		80		0.995493
704		80		20	0.995493
836		25		75	1.0
838		12		87	0.992554
839	87	12			0.992554
895	85			14	0.993533
899		85	14		0.993533
905		14		85	0.993533
907	14			85	0.993533
912		14		85	0.993533
916	85	14			0.993533
932	83	16			0.994512
933		16		83	0.994512
934	16	83			0.994512
935	16	83			0.994512
956		75		25	0.996473
1028		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain