SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene11599

Length: 1833 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene11599 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	cysteine proteinase [Elaeis guineensis]	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	cysteine protease	-	-	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Cysteine endopeptidases.	EC:3.4.22.-	-	0.0	78%

Source	GOs	Term	Type	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	78%
Blast2go	cysteine-type endopeptidase activity	GO:0004197	Molecular Function	78%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Peptidase C1A, papain	IPR013128	-	-
Sma3	Peptidase C1A, papain C-terminal	IPR000668	-	-
Sma3	Proteinase inhibitor I29, cathepsin propeptide	IPR013201	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NLD7

Fln msg:

Fln protein: MARVLAIVLSTLFLLAVSVSAARSFEETGYIDMVTDKIQDLESNFVKILGTNPKSLQFAEFAVRYGKRYDSVHQLVHRFNVFVKNVELIESRNRMKLPYTLAINEFADITWEEFHGQYLGASQNCSATNSNHKLTYAQLPAEKDWRQEGIVSPVKNQAHCGSCWTFSTTGALEAAYTQATGKTVILSEQQLVDCAGAFNNFGCSGGLPSQAFEYIKYNGGLDTEEAYPYLAKDGVCKYDVNNVGVKVADSVNITLGAEDELKAAVGLVRPVSVAFQVNQEFRFYKEGVFTSTTCGQGPMDVNHAVLAVGYGVSEEGTPHWIIKNSWGKTWGVDGYFKMELGKNMCGVATCASYPIVS*

Protein Length: 359

Fln nts: ATGGGGAGCACTAGCGTGCATGATCGGATGGCCCACTTGAAAAGACTTCCCGACTTGGTGATCGTTATACCTACAGATTCCCTATGAACCCTTCGCTATATTAACAGATACGAGGGATCTATCAGCTCTCCAACCAACCCACCTCATTCTTTCTTCACCACTGATCTCGCCTTTGCTCTGTTCAGAGGTTTCAACAGTCTCGCCCGCC_-_ATGGCTCGCGTCCTCGCCATTGTTCTGAGCACTTTGTTTTTGCTGGCCGTATCTGTATCTGCTGCCAGGTCGTTTGAAGAAACGGGGTATATTGATATGGTCACTGACAAGATCCAGGACCTGGAGTCCAATTTCGTTAAAATCTTGGGAACCAATCCCAAGTCTCTACAGTTCGCGGAGTTCGCTGTCAGATATGGCAAGAGGTACGATTCTGTCCATCAGCTTGTGCATAGATTCAATGTTTTTGTGAAGAACGTGGAGCTGATCGAGTCAAGAAACAGAATGAAGCTTCCTTATACTTTGGCAATAAATGAGTTTGCTGACATAACATGGGAGGAATTCCATGGACAATATTTGGGTGCTTCACAGAACTGTTCGGCTACCAACAGTAACCATAAGTTGACGTATGCCCAGCTTCCTGCGGAGAAAGACTGGAGACAAGAAGGCATAGTGAGTCCTGTAAAAAACCAAGCCCATTGTGGCTCCTGCTGGACATTCAGCACTACTGGAGCACTAGAGGCTGCCTATACTCAGGCTACAGGAAAGACTGTTATCCTGTCTGAACAGCAGCTGGTTGACTGTGCTGGAGCATTTAACAACTTTGGTTGCAGTGGTGGACTGCCATCCCAAGCATTTGAGTATATCAAGTACAACGGAGGGCTTGACACTGAGGAAGCCTATCCTTACCTGGCTAAAGATGGTGTTTGTAAATATGATGTAAACAATGTCGGTGTAAAGGTTGCTGATAGTGTCAACATCACTTTGGGGGCAGAAGATGAGCTCAAAGCTGCTGTGGGTCTAGTTCGCCCTGTCAGTGTGGCATTCCAAGTTAATCAGGAATTTCGATTTTACAAGGAAGGAGTCTTTACAAGCACAACTTGTGGTCAAGGCCCAATGGATGTCAACCATGCTGTTTTGGCCGTTGGGTATGGTGTTAGTGAGGAGGGGACTCCACACTGGATCATCAAGAATTCCTGGGGAAAGACCTGGGGTGTTGATGGATACTTCAAGATGGAGTTGGGGAAGAATATGTGTGGTGTTGCAACTTGTGCTTCGTACCCTATTGTTTCTTAG___AGCCTCACGTAGTAAATATGTACTATTCAAGGTTTGAAAGCTTCGTCAATTAGGATGTACAAAAACAAGATGGACACGATGTAATGCAGAACAGGTGCAATATATAAATAATGTATGGAAGTTTCAGTCGTTTAGAGCCATTAGTGCTTTTGTAATTTTTATACCAAGACTGTTTAGTTGCTAGTAATCATATGATTAAGTTTGATACTATTGAATGTTGCCTTGTGTATGTTGATGACAATACAAAGAATACATGTATTGGATTTGAACACTGTATTTTAATTAAATTTAAGATAGTCTAAGTGAGGGAGGAATAGCTGTCAATCAGTCTGTTATGAACCATGCACTTTAGAAATTATAAGAAGTCAAGGAATACAATCCAATTCAAGGGTGGACCTTCTTTTACAATGAATACAATACAATACTAGATATGATGATTCCAAGAGTAGGTCTCCTTGGTGTCTGTGTAGGAGACAAAGTGTGTAATTATAATGAATGAGTACAATAAAATGTTCTAGCCTACATAACAATATTAATGTAATAACTCAATA

Fln Alignment:

Contig11599___MARVLAIVLSTLFLLAVSVSAARSFEETGYIDMVTDKIQDLESNFVKILGTNPKSLQFAEFAVRYGKRYDSVHQLVHRFNVFVKNVELIESRNRMKLPYTLAINEFADITWEEFHGQYLGASQNCSATNSNHKLTYAQLPAEKDWRQEGIVSPVKNQAHCGSCWTFSTTGALEAAYTQATGKTVILSEQQLVDCAGAFNNFGCSGGLPSQAFEYIKYNGGLDTEEAYPYLAKDGVCKYDVNNVGVKVADSVNITLGAEDELKAAVGLVRPVSVAFQVNQEFRFYKEGVFTSTTCGQGPMDVNHAVLAVGYGVSEEGTPHWIIKNSWGKTWGVDGYFKMELGKNMCGVATCASYPIVS
A9NLD7_______________MARILAIVLSTLLALAIAVSAARSFEETEYIDMVTDKIQNLESSLFKILGTNPKSVQFAEFALRYGKRYDSVRQLVHRFNAFVKNVELIESRNSMNLPYTLAINEFADITWEEFHGQYLGASQNCSATKSNHKFTDAQPPTKKDWREEGIVSPVKNQAHCGSCWTFSTTGALEAAYTQATGKTVILSEQQLVDCAGAFNNFGCSGGLPSQAFEYIKYNGGLDTEEAYPYTAKDGVCNYDVNNVGVKVADSVNISLGAEDELKSAVGLVRPVSVAFQVIQDFRFYKEGVFTSTTCGQGPMDVNHAVLAVGYGVSEEGTPHWIIKNSWGKSWGVEGYFKMEMGKNMCGVATCASYPVVS

SNPs (tot: 44)

Position	A %	C %	G %	T %	Probability
197	85	14			0.993533
236		14	85		0.993533
257	14	85			0.993533
322	77	22			0.999999
345	90	10			0.90298
1281	3	97			0.999802
1311	97	2			0.933298
1313		97		2	0.933298
1319		3		96	0.999911
1355	2			97	0.971188
1376	3	96			0.982166
1408		3	96		0.989722
1411	1		94	3	0.951749
1425	1	94	3		0.964041
1462		5	95		0.997749
1483	92	8			0.999718
1511		12	87		0.999964
1619	2		97		0.969538
1624		97		2	0.971188
1629	4		95		0.999981
1631	5		94		1.0
1632		1	71	25	1.0
1646	96	3			0.98536
1687		2	93	4	0.983471
1695		5		94	0.998894
1696	6		90		0.996531
1698		12	87		1.0
1699	3	6		90	0.996531
1700	6		3	90	0.996531
1701	6	3	87		0.990219
1702		6	90		0.996531
1703	3		6	90	0.996531
1705	6	20	65	3	1.0
1707		22	77		1.0
1708	80	15		3	1.0
1709		20	75	4	1.0
1710	80	5		15	1.0
1711			89	10	0.999919
1713	12			81	0.999943
1715	86	13			0.999973
1716	13	6		80	0.999961
1719	80		13		0.999961
1723	6	80	13		0.999961
1724	20			80	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
127	141	GTATT GTATT GTATT	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain