SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene11591

Length: 1012 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene11591

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Chromatin remodeling complex subunit n=1 Tax=Populus trichocarpa RepID=B9GVF7_POPTR	-	-	6.0e-25	31%
FL-Next	tr=Chromatin remodeling complex subunit; subsp. trichocarpa).	-	-	0.0	31%
Blast2go	chromatin remodeling complex subunit	-	-	1.15265e-26	54%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA binding	GO:0003677	Molecular Function	1.15265e-26	54%

Source	InterPros	Term	Type	e value	Identity
Sma3		IPR012287	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9GVF7

Fln msg: Distance to subject end: 306 aas, your sequence is shorter than subject: 337 - 2327

Fln protein: LQLQMPTVKTAARDLVFPNLSSSVNLDSFYDPLQDLPVLTSASSMRLHQNEAIHNQQPALSIRGAVASTYGLPSGYGSYARDTCTSANVGNKQPDIIKLSSSTLSQREEYPMQSQKRLESLEPWSEDELDALWTGVRRHGKGSWDAMLRDPRLKFSRTRSAEDLADKWATEQLKIFGGPILPPVRSTRQETIPGHIEVPFRSASVANKFPTFSIDHGVSSRIQNQVIDKQLAQGDFSSSRYPWIDSTEGKNSAKWSPFNLMNEQTPPVPPFKGDCSAGKMSLFGDMSVGDVGAMGRISSKEQGKQLVDSVDRFVIPGKIQVEPSFPVYPGAGRPIYI

Protein Length: 338

Fln nts: GCTTCAATTACAAATGCCAACTGTTAAGACGGCTGCTCGTGATCTTGTGTTCCCGAATTTGTCTTCATCTGTGAACCTTGACAGCTTTTATGATCCATTACAAGATCTCCCTGTTCTCACTTCAGCATCTAGTATGAGGTTACATCAAAATGAGGCAATTCATAATCAACAACCAGCTTTGTCTATCAGGGGTGCAGTGGCATCCACATATGGACTACCATCTGGTTATGGTTCATATGCCCGAGATACCTGCACATCTGCTAATGTTGGTAATAAGCAGCCAGATATTATCAAGCTGAGCTCAAGCACATTGAGCCAGCGGGAAGAGTATCCCATGCAATCCCAAAAAAGATTGGAGTCCTTGGAACCCTGGAGTGAGGATGAATTGGATGCCTTATGGACTGGTGTGCGAAGGCATGGTAAGGGTAGTTGGGATGCAATGCTTCGAGATCCTCGACTGAAGTTTTCAAGAACCCGATCTGCGGAAGATCTGGCTGATAAATGGGCAACTGAACAGTTGAAAATATTTGGCGGACCAATATTACCACCTGTGAGATCTACAAGGCAGGAAACTATTCCAGGTCATATAGAAGTGCCATTCAGAAGTGCATCAGTCGCAAATAAGTTCCCAACATTTAGCATTGACCATGGGGTCTCTTCTAGAATACAAAATCAAGTCATAGACAAACAGTTGGCACAAGGTGATTTCTCATCCAGCAGGTACCCTTGGATTGATAGCACTGAGGGAAAGAATTCTGCAAAATGGTCACCCTTTAATCTGATGAATGAACAGACTCCTCCCGTACCACCCTTCAAAGGTGATTGTTCTGCAGGTAAGATGAGTTTATTTGGTGACATGTCTGTTGGAGATGTAGGAGCTATGGGGAGGATTTCATCCAAGGAACAAGGAAAGCAACTGGTGGATAGTGTGGACAGGTTTGTAATACCTGGCAAGATACAAGTAGAGCCTTCCTTTCCTGTGTACCCTGGAGCAGGCAGACCTATATACATT

Fln Alignment:

Contig11591___LQMPTVKTAARDLVFPNLSSSVNLDSFYDPLQDLPVLTSASSMRLHQNEAIHNQQPALSIRGAVASTYGL---PSGYGSYARDTCTSANVGNKQPDIIKLSSSTLSQREEYPMQSQKRLESLEPWSEDELDALWTGVRRHGKGSWDAMLRDPRLKFSRTRSAEDLADKWATEQLKIFGGPILPPVRSTRQETIPGHIEVPFRSASVANKFPTFSIDHGVSSRIQNQVIDKQLAQGDFSSSRYPWIDSTEGKNSAKWSPFNLMNEQTPPVPP---------FKGDCSAG
B9GVF7_______________LPSKSIPSTHHDLL-PSLSLGRRLEAVNDSMRDLPAMPLLPNLKFHPQDAIRYNQ----LEKEVPPTLGLGQMPSSFPSFPE------NHRKVLENIIMRTGSGSSS-----LYSKK--SKVDVWSEDELDFLWVGVRRYGRGNWDAMLRDPRLKFSKYKTSEDLAVRWEEEQLKFLDGSAFPLLKTLKATKSSKSSLFP----SIPEGMMTRALHGSRPSKFQSHLTDMKLGFGDLSSS-LPHFEPLD--------QLSLRNEHFSPIPTWNPDELQANFVGDSSAG

SNPs (tot: 4)

Position	A %	C %	T %	Probability
602		66	33	0.997452
633		66	33	0.997452
804	33	66		0.997452
806		66	33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain