SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene11568

Length: 1083 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene11568

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	protein TOPLESS [Arabidopsis thaliana] ref\|NP_849672.1\| protein TOPLESS [Arabidopsis thaliana] ref\|NP_001031050.1\| protein TOPLESS [Arabidopsis thaliana] ref\|NP_001031051.1\| protein TOPLESS [Arabidopsis thaliana] sp\|Q94AI7.1\|TPL_ARATH RecName: Full=Protei	-	-	92%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	protein topless	-	-	96%

Source	GOs	Term	Type	Identity
Blast2go	primary shoot apical meristem specification	GO:0010072	Biological Process	96%
Blast2go	jasmonic acid mediated signaling pathway	GO:0009867	Biological Process	96%
Blast2go	xylem and phloem pattern formation	GO:0010051	Biological Process	96%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	96%
Blast2go	protein homodimerization activity	GO:0042803	Molecular Function	96%
Blast2go	nucleus	GO:0005634	Cellular Component	96%
Blast2go	cytosol	GO:0005829	Cellular Component	96%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Histidine phosphatase superfamily, clade-2	IPR000560	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	LisH dimerisation motif	IPR006594	-	-
Sma3	CTLH, C-terminal LisH motif	IPR006595	-	-
Sma3	LisH dimerisation motif, subgroup	IPR013720	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	F-box associated interaction domain	IPR017451	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Cytochrome b5, heme-binding site	IPR018506	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
735	25		75		0.996473
737	25			75	0.996473
907	40		60		1.0
1055	20	80			0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
83	94	CTT CTT CTT CTT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain