SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene11538

Length: 838 nt

Origin of reads: Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene11538

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Amino acid permease (Fragment) n=1 Tax=Plantago major RepID=Q5ZF81_PLAMJ	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	55%
Blast2go	amino acid permease	-	-	70%

Source	GOs	Term	Type	Identity
Blast2go	acidic amino acid transport	GO:0015800	Biological Process	70%
Blast2go	amino acid transmembrane transport	GO:0003333	Biological Process	70%
Blast2go	neutral amino acid transport	GO:0015804	Biological Process	70%
Blast2go	amino acid transmembrane transporter activity	GO:0015171	Molecular Function	70%
Blast2go	integral to plasma membrane	GO:0005887	Cellular Component	70%

Source	InterPros	Term	Type	e value	Identity
Sma3	Amino acid transporter, transmembrane	IPR013057	-	0.0	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 85)

Position	A %	C %	G %	T %	Probability
66			33	66	0.997452
67	66			33	0.997452
68	66	33			0.997452
69		66	33		0.997452
72	33		66		0.997452
73		33	66		0.997452
74		33		66	0.997452
79	66	33			0.997452
89			66	33	0.997452
91	33	66			0.997452
153		33	66		1.0
154	16		83		0.994512
155		16		83	0.994512
156		50		50	1.0
157			33	66	1.0
159		50	50		1.0
160	33		66		1.0
162		83		16	0.994512
163		50	16	33	1.0
164	50			50	1.0
165		16	83		0.994512
166	16	50	33		1.0
168		14		85	0.993533
170		14		85	0.993533
171	57	42			1.0
172	28		14	57	1.0
173		28		71	1.0
174			14	85	0.993533
175	14		57		1.0
177	57	14			1.0
178	85			14	0.993533
180	85		14		0.993533
181	85		14		0.993533
182		14		85	0.993533
185	85	14			0.993533
187		14	85		0.993533
188	85			14	0.993533
189		28		71	1.0
190	14			85	0.993533
193		20	80		0.999996
194			20	80	0.999996
196		20	80		0.999996
202	80	20			0.999996
203	61	38			1.0
204	61		23	15	1.0
212	61	38			1.0
213	61			38	1.0
214	61		15	23	1.0
215			84	15	0.999986
216		15	84		0.999986
218	76			23	1.0
219		15	84		0.999986
222	33	8			1.0
223		23	76		1.0
224			76	23	1.0
244	86		13		0.999973
245		86		13	0.999973
246		13		86	0.999973
247	86		13		0.999973
249	86		13		0.999973
251	86	13			0.999973
252		13	86		0.999973
255			13	86	0.999973
261		13		86	0.999973
263		13	86		0.999973
348	86		6	6	0.995852
350		7	7	85	0.996721
352			14	85	1.0
353	7			92	0.999532
355	92	7			0.999532
356	85			14	1.0
357		92		7	0.999532
358	7		92		0.999532
359	92		7		0.999532
361	92		7		0.999532
363	92	7			0.999532
365		7		92	0.999532
366			92	7	0.999602
367		7	92		0.999602
368	7		92		0.999602
382	92		7		0.999602
660			10	90	0.90298
661		10		90	0.90298
718	14			85	0.993533
719	83	16			0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain