SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene11532

Length: 1717 nt

Origin of reads: Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene11532

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cytochrome P450 750A1 n=1 Tax=Pinus taeda RepID=C75A1_PINTA	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	73%
Blast2go	cytochrome p450 71a1-like	-	-	69%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	69%
Blast2go	heme binding	GO:0020037	Molecular Function	69%
Blast2go	monooxygenase activity	GO:0004497	Molecular Function	69%
Blast2go	electron carrier activity	GO:0009055	Molecular Function	69%
Blast2go	membrane	GO:0016020	Cellular Component	69%

Source	InterPros	Term	Type	Identity
Sma3	Protease inhibitor I4, serpin	IPR000215	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Lipoxygenase, C-terminal	IPR013819	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PPU6

Fln msg: your sequence is shorter than subject: 485 - 526

Fln protein: FPWPIIGNLHQLVQPAHRSLKALADKYGPIFSLRLGSVPAIVVSSSEMAKLFLKTHELVFSSRPLTSSGK*IFFNYQDVIFAQYGDHWREMRKICVLELLTAKRIESFRPVREEEVSAMIRSIWEESENGIITVKLSKAISTLNSNIIWRMLAGRKFTDDDLGGDFGSFKDLIVELISTVGAFNIGDFIPCLDWLDLQGIKGRMKKMHKAFNEFAEQILDDHVAHRMASSTSNQQKEEEPYVKDFVDVLIEKAEADSKMTRETVKAVVLDMLAGGLETTSTTLEWAMSELLRNPHVMKSLQEEIECVVGKDRKVKESDVATMKYLHCVLKETLRLYPPAAIAIPHESIEAVTVGRYHIPKKTMLIANVWAIGRDPNVWGADACEYKPERFMKDEHVNSTDQSDFSMIPFSAGRRGCPGAPMAIPTIELTLARLVHIFNWRVEGDPSQLDMTEVCGASIPRQVPLFAYPTLRVSFPLYYSSDAKG*

Protein Length: 486

Fln nts: TTTCCATGGCCAATAATCGGAAATCTCCACCAATTGGTACAGCCCGCTCACCGTAGTCTTAAAGCCCTTGCTGACAAATATGGCCCCATTTTCTCTCTGCGTTTAGGTTCTGTCCCTGCTATCGTCGTTTCTTCTTCTGAGATGGCCAAACTCTTTCTTAAAACCCATGAaTTGGTGTTTTCCAGCCGGCCTCTAACATCctCgGGGAAATAaATATTcTtCAACTATCAGGATGTGATCTTCGCTCAGTATGGAGATCACTGGAGGgAAATGAGAAAAATATGCGTATTAGAACTCCTGACGGCCAAAAGAATCGAGTCCTTCAGGCCCGTGCGAGAGGAAGAGGTGTCTGCCATGATCCGTTCAATCTGGGAGGAGAGTGAGAACGGAATAATAACCGTGAAaCTGAGCAAGGCCATCTCTACTCTCAACTCCAACATAATTTGGCGGATGCTGGCAGGGAGGAAATTTACTGACGATGAcTTGGGTGGGGATTTCGGAAGTTTTAAGGATTTAATAGTAGAGCTGATATCTACAGTAGGAGCTTTTAACATCGGAGACTTTATTCCTTGTCTGGATTGGCTTGATCTGCAAGGCATCAAAGGGCGCATGAAGAAGATGCATAAAGCATTCAATGAATTTGCAGAGCAAATATTAGACGACCACGTTGCTCATCGCATGGCGTCGTCGACCTCGAATCAGCAGAAAGAGGAAGAGCCCTATGTAAAAGATTTCGTCGATGTATTGATCGAGAAAGCTGAGGCCGACTCCAAAATGACGCGGGAAACTGTCAAGGCTGTCGTGCTTGACATGCTCGCAGGTGGTTTGGAGACGACATCGACTACCTTAGAATGGGCAATGAGTGAGCTGCTCAGAAATCCCCATGTGATGAAGAGTTTGCAAGAAGAAATCGAATGTGTCGTCGGCAAAGATCGAAAAGTGAAAGAATCTGATGTAGCAACCATGAAATACCTCCATTGCGTGCTGAAAGAGACGCTAAGATTATACCCACCTGCGGCGATAGCGATTCCTCATGAATCTATAGAGGCTGTGACAGTCGGAAGATACCATATCCCTAAGAAAACAATGTTGATTGCGAATGTGTGGGCTATAGGAAGGGATCCCAATGTGTGGGGGGCAGATGCTTGCGAATACAAGCCGGAAAGATTCATGAAGGATGAACATGTCAATTCAACAGATCAATCAGACTTCAGTATGATTCCGTTTAGTGCAGGAAGGAGAGGATGCCCAGGGGCACCCATGGCAATTCCCACGATTGAACTCACATTGGCTCGGCTGGTGCACATTTTTAACTGGAGAGTTGAAGGTGATCCGTCCCAGCTCGACATGACGGAAGTGTGCGGAGCCTCGATTCCAAGGCAAGTTCCGCTGTTTGCTTATCCAACGTTAAGGGTAAGCTTTCCACTCTATTACAGTTCTGACGCCAAAGGGTAA___GATTTCCACTCTAGTACATTTACGAAGCCTAACAGTGGCAAGGCACCGTACCGCTTTCCTATTTTCGCGACAATGCTTTCGCTACATGCTCTTCTAGTTTGTACCATTGCTTTCGCTGCTCGCCTTTCCAAAATTGTTTAGCTTTTGCAATTAGCTTTTGCAATTTCTGTTCCATATCAGGTGGGCAGAAGATTAGTCCTGTATTTTTCCGTCCAAATATTAATCAGTATAAGACTATTTTCGTTTGTGTTACAAGCTTTGC

Fln Alignment:

Contig11532___PIIGNLHQLVQPAHRSLKALADKYGPIFSLRLGSVPAIVVSSSEMAKLFLKTHELVFSSRPLTSSGK*IFFNYQDVIFAQYGDHWREMRKICVLELLTAKRIESFRPVREEEVSAMIRSIWEESENGIITVKLSKAISTLNSNIIWRMLAGRKFTDDDLGGDFGSFKDLIVELISTVGAFNIGDFIPCLDWLDLQGIKGRMKKMHKAFNEFAEQILDDHV-AHRMASSTSNQQK--EEEPYVKDFVDVLIEKAEADSKMTRETVKAVVLDMLAGGLETTSTTLEWAMSELLRNPHVMKSLQEEIECVVGKDRKVKESDVATMKYLHCVLKETLRLYPPAAIAIPHESIEAVTVGRYHIPKKTMLIANVWAIGRDPNVWGADACEYKPERFMKDEHVNSTDQSDFSMIPFSAGRRGCPGAPMAIPTIELTLARLVHIFNWRVEGDPSQLDMTEVCGASIPRQVPLFAYPTLRVSFPL
C0PPU6_______________PIIGNLHQLVLPAHRTFKSLADKYGPIFFLRLGSVPTVVVSSSEIAKQFLKNHDLIFASRPPRAAGRLIFFNFEDVVFAPYGEHWRQMRKICVLELLTAKRIESFKHVREEEVSSMIRSVWEESENGRMGVNVSKAISTLTSNIVWRILANRKFSDDDLGGDFKGFKDLLVELIARVGDFNIGDFIPYLDWLDLQGINRCMKKIHKTFDEFAEKIIDDHVNANHLMAAASNGQKRADAEPHVQDFVDVLLHMAVTDTKITRETIKALVLDMFGAGLETTSTTLEWAMSELLRHPHVMKKLQEEIESIVGHHGKVKGSNLATMKYLHCVVKETLRLYPAVPLMVPHESVEAVTIAGYYIPKKTTVMVNVWAIGRDPNVWGAYASKFKPERFMEYEQINLTDQSDFSMIPFGAGRRGCPGASMAIPTIELALAQLLHTFDWRVEGDPSQLDMKEVCGVTIPRQVPLCAYPRLRVSFPL

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
1366	33		66		1.0
1411	33		66		1.0
1448	33		66		0.997452
1506	50		50		1.0
1582		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain