SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene11499

Length: 963 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene11499 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	EVE domain containing protein	-	-	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	thymocyte nuclear protein 1-like	-	-	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	transferase activity	GO:0016740	Molecular Function	0.0	72%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	EVE domain	IPR002740	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3		IPR015706	-	-

Full-Lengther Next Prediction

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
575		5	78		1.0
581	16			83	1.0
582			16	83	1.0
583		16		83	1.0
586		83	16		1.0
587	83		16		1.0
592	83		16		1.0
594		16	83		1.0
721	47		52		1.0
734	82		17		1.0
735	11	5		82	0.999919
737	11	82	5		0.999919
744			12	87	0.999964
883		92		7	0.999532
884		92	7		0.999532
887	7			92	0.999532
888		76	8	16	1.0
890		8		92	0.999718
891	8	92			0.999718
892	8			92	0.999718
896		8		91	0.999766
897	8	91			0.999766
898		41		58	1.0
900	8			91	0.999766
902			8	91	0.999766
940	14			85	0.999981
948	85	14			0.993533
949	85	14			0.993533
950	85	14			0.993533
957	20	80			0.995493
958	20	80			0.995493
960	60	20		20	0.99255
961	40			60	1.0
962			75	25	0.996473
963		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain