SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene11493

Length: 600 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene11493 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	metal-dependent phosphohydrolase HD domain-containing protein [Arabidopsis thaliana] gb\|AAK63855.1\|AF389282_1 AT5g40270/MSN9_170 [Arabidopsis thaliana] dbj\|BAB10908.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAM26721.1\| AT5g40270/MSN9_170 [Arabi	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	71%
Blast2go	metal-dependent phosphohydrolase hd domain-containing protein	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	RNA methylation	GO:0001510	Biological Process	78%
Blast2go	rRNA processing	GO:0006364	Biological Process	78%
Blast2go	S-adenosylmethionine-dependent methyltransferase activity	GO:0008757	Molecular Function	78%
Blast2go	iron-sulfur cluster binding	GO:0051536	Molecular Function	78%
Blast2go	hydrolase activity	GO:0016787	Molecular Function	78%
Blast2go	RNA methyltransferase activity	GO:0008173	Molecular Function	78%
Blast2go	cytoplasm	GO:0005737	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	Metal-dependent phosphohydrolase, HD domain	IPR003607	-	-
Sma3	Ribosomal RNA large subunit methyltransferase RlmN;	IPR004383	-	-
Sma3	Elongator protein 3/MiaB/NifB	IPR006638	-	-
Sma3	Metal-dependent phosphohydrolase, HD subdomain	IPR006674	-	-
Sma3	Radical SAM	IPR007197	-	-

Full-Lengther Next Prediction

SNPs (tot: 39)

Position	A %	C %	G %	T %	Probability
245		90		10	0.90298
246		90	10		0.90298
249	90			10	0.90298
250			10	90	0.90298
254		10	90		0.90298
256	10			90	0.90298
257	10			90	0.90298
258		90	10		0.90298
259			10	90	0.90298
261		10	90		0.90298
262	10		90		0.90298
263	90	10			0.90298
268	90		10		0.90298
274	88		11		0.923564
275		88		11	0.923564
276	88		11		0.923564
279		55		33	1.0
283			11	88	0.923564
286	11			88	0.923564
291		11		88	0.923564
294		11		88	0.923564
296		87	12		0.992554
297		87		12	0.992554
299	12		87		0.992554
302	87	12			0.992554
303		12		87	0.992554
304	87			12	0.992554
308		12	87		0.992554
311	12			75	0.975346
313	87	12			0.992554
315	87		12		0.992554
316	14	85			0.993533
318	85		14		0.993533
321	14	85			0.993533
322		16		83	0.994512
323			16	83	0.994512
324	16			83	0.994512
325		16		83	0.994512
327	80		20		0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain