SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene11484

Length: 776 nt

Origin of reads: Biogeco1 v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene11484

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Laccase n=1 Tax=Pinus taeda RepID=Q9AUI4_PINTA	-	-	95%
FL-Next	tr=Laccase; Pinus taeda (Loblolly pine).	-	-	95%
Blast2go	laccase 110c	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Laccase.	EC:1.10.3.2	-	0.0	87%

Source	GOs	Term	Type	Identity
Blast2go	lignin catabolic process	GO:0046274	Biological Process	87%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	87%
Blast2go	laccase activity	GO:0008471	Molecular Function	87%
Blast2go	copper ion binding	GO:0005507	Molecular Function	87%
Blast2go	apoplast	GO:0048046	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Oxidoreductase, molybdopterin-binding domain	IPR000572	-	-
Sma3	Multicopper oxidase, type 1	IPR001117	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Multicopper oxidase, copper-binding site	IPR002355	-	-
Sma3	Bacterial extracellular solute-binding family 1, conserved site	IPR006061	-	-
Sma3	Cupredoxin	IPR008972	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Multicopper oxidase, type 2	IPR011706	-	-
Sma3	Multicopper oxidase, type 3	IPR011707	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Laccase	IPR017761	-	-
Sma3	Glycoside hydrolase, family 1, active site	IPR018120	-	-

Full-Lengther Next Prediction

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
149		83	16		0.994512
242	14			85	0.993533
246			14	85	0.993533
250		14		85	0.993533
276	85		14		0.993533
393	66	33			1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
370	381	TCA TCA TCA TCA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain