SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene11483

Length: 1393 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene11483 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ribosomal protein L9/RNase H1 [Arabidopsis thaliana] dbj\|BAA97147.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAO22701.1\| unknown protein [Arabidopsis thaliana] gb\|AAO42390.1\| unknown protein [Arabidopsis thaliana] gb\|AED96300.1\| Ribosomal protei	-	-	3.0e-27	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Blast2go	50s ribosomal protein l9	-	-	0.0	69%

Source	GOs	Term	Type	Identity
Blast2go	ribosome biogenesis	GO:0042254	Biological Process	69%
Blast2go	translation	GO:0006412	Biological Process	69%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	69%
Blast2go	ribosome	GO:0005840	Cellular Component	69%
Blast2go	mitochondrion	GO:0005739	Cellular Component	69%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L9	IPR000244	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADP1

Fln msg:

Fln protein: MGRLQFGRTVLQQLTKLSSSAARVGSGHTELPWTSIARGIRFRKQLECILTTDINKLGKAGETVKVSPGYFRNHLMPKLLAVPNHDQYAYLIREQQKLYQRHEEEEKTVVVQKTGEEQMEEYKSAARRLDRGLVGLRRLVLNYGKELRYPVTKEELLAEVQRQLGVILQEENLVMPSNITMCGKHEIPLRLPKSLPLPGGKPQISLKIKVQRK*

Protein Length: 215

Fln nts: ATGGGGGTAGAGAAGTGAATGAAATGCTCGTTCAGACCCTAGGTGGGTAAAAACCTTTTTCGGCAGAGCGGGTATAAAACATTAAGAGACTAAAGGCAGATGGTAGGCACAGACAACGGTCGAACCTGTAACAATTACAATATTGAACACAATAAAACAGAGGAAGAGAGGAGCAGCATACCTTGCAAATTTCTTTTTGGGCGATGAATGAAATATTTAGGTTGGATTGACCTAGTCAGTACTCGGGACACTGGTGGAAA_-_ATGGGGCGTTTGCAGTTTGGGCGAACAGTGTTGCAGCAACTCACAAAGTTGTCCAGCAGCGCCGCAAGAGTAGGCTCAGGGCACACAGAGCTTCCATGGACCTCCATAGCGAGGGGCATCAGATTTCGGAAACAGCTCGAATGCATTCTTACAACGGATATTAATAAGTTGGGGAAAGCAGGGGAGACTGTGAAAGTCAGTCCTGGTTATTTCCGGAATCATTTGATGCCCAAACTGCTGGCTGTGCCGAATCATGACCAGTATGCGTATCTCATCAGAGAACAACAGAAGCTCTATCAGCGTCATGAAGAAGAGGAAAAAACTGTGGTAGTTCAGAAAACAGGGGAAGAACAGATGGAAGAGTATAAATCTGCAGCAAGGCGTTTGGATCGTGGACTCGTGGGTCTACGGAGGCTTGTTCTAAATTATGGAAAAGAATTACGGTATCCTGTTACAAAGGAAGAGCTTTTGGCAGAGGTACAAAGACAGCTAGGAGTAATTTTACAAGAAGAAAATTTAGTCATGCCGTCCAATATAACAATGTGTGGAAAACACGAAATACCGCTGCGGTTACCAAAATCACTCCCGTTACCTGGTGGAAAGCCACAAATATCTTTAAAAATTAAAGTTCAAAGGAAGTAA___GACTATGTGCACTATATCTTGGATGAGGTATTGGCCTCCTGGTGTATATTTGACACCAGGGTCATTTTGGTGCCCATGTTTTCCATCATTGAATATTTGGTCACCAGAATGATATCTTTTAATCTGGATTCTGGATTCTCTACATTGATCTCGCATTATCTATTTCTACTGCTTCACTTAAATGGCACACTTTCTTCACACAAGGAATAGAAAGCATTGATTCCCTATGAAGCCTACTGCATCAATGATTCAATTATAACTATTTAATCATTAATATTTTTTCTCAAACTGTAGTAACAGTCACTTGATAGGAAATATTGATCTGAATCTTGTTTCACATTCACTAGAAGTCACTCATGTTTAACCGCATTTGTTTTCCTTGGAACTATAATTTCTACATACAATCTATGTATGTTGATATGTAGTTCATTAATATACTTTCATCATAAGTTACTACATTCATGGACATGATGGAAATTGCTGGCATTCGC

Fln Alignment:

Contig11483___MGRLQFGRTVLQQLTKLSSSAARVGSGHTELPWTSIARGIRFRKQLECILTTDINKLGKAGETVKVSPGYFRNHLMPKLLAVPNHDQYAYLIREQQKLYQRHXXXXXXXXXXXXXXEQMEEYKSAAXXXXXXXXXXXXXXLNYGKELRYPVTKEELLAEVQRQLGVILQEENLVMPSNITMCGKHEIXXXXXXXXXXXXXXPQISLKIKVQR
D5ADP1_______________MGRLQFGRTVLQQLTKVSSSATRLGSGHAELPWTSIARGIRYRKQLECILTTDISKLGKAGETVKVAPGYFRNHLMPKLLAVPNRDHYAYLIREQQKLYQHHEKEEKAEVVQKTGEEEMEEYKSAARRLDRGLLGLRRIVLNYGKELRFPITKEEVLAEVQRQLGVILEEENLVMPSNITMCGRYEIPLRLPKSLPLPGGKPQISLKVKVQR

SNPs (tot: 71)

Position	A %	C %	G %	T %	Probability
486	88	11			0.923564
487	22			77	0.999999
488	88			11	0.923564
491		88	11		0.923564
493		11		88	0.923564
496			11	88	0.923564
497	12			87	0.992554
499		87	12		0.992554
614		47		52	1.0
659		80	20		1.0
662	21	78			1.0
665	78	14	7		0.999974
669		78	21		1.0
672	7	14		78	0.999974
673		7	14	78	0.999974
674	14	78	7		0.999974
676			21	78	1.0
695	63		36		1.0
730		88	11		0.923564
731		88	11		0.923564
732		88	11		0.923564
734		77	11	11	0.968132
737		22	77		0.999999
738	11		11	77	0.968132
739	12	87			0.992554
742	12	75			0.975346
744	57		14	14	0.979185
747	14	85			0.993533
748	57	42			1.0
749	85		14		0.993533
751		85	14		0.993533
753		83		16	0.994512
755	16			83	0.994512
756		16		83	0.994512
758	16	83			0.994512
759		16		83	0.994512
823			16	83	0.994512
826			16	83	0.994512
845			16	83	0.994512
846	16	83			0.994512
852	16			83	0.994512
853		16		83	0.994512
854	16	83			0.994512
855			16	83	0.994512
857		16		83	0.994512
858	16		83		0.994512
860			16	83	0.994512
862	83			16	0.994512
863		16	83		0.994512
865		16		83	0.994512
998	11		88		0.923564
999	11	88			0.923564
1017	22		77		0.999999
1191	88		11		0.923564
1192			11	88	0.923564
1194	11		88		0.923564
1195		66		33	1.0
1203	33		66		1.0
1288		30	70		1.0
1291		30		60	1.0
1292	40	10		10	1.0
1293		20		80	0.999996
1294	14	71			0.984337
1305	80		20		0.995493
1331		25		75	0.996473
1335		25	75		0.996473
1336	75	25			0.996473
1337	75	25			0.996473
1338	75	25			0.996473
1340	75			25	0.996473
1388	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain