SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene11454

Length: 700 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene11454

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Flavonoid 3-hydroxylase, putative n=1 Tax=Ricinus communis RepID=B9SBG5_RICCO	-	-	8.40779e-45	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	41%
Blast2go	flavonoid 3-	-	-	0.0	66%

Source	ECs	Term	Type	e value	Identity
Blast2go	Oxidoreductases, Acting on paired donors, with incorporation or reduction of molecular oxygen, With NADH or NADPH as one donor, and incorporation of one atom of oxygen.	EC:1.14.13.-	-	0.0	66%

Source	KEGGs	Term	Identity
Blast2go	Ubiquinone and other terpenoid-quinone biosynthesis	00130	66%
Blast2go	Histidine metabolism	00340	66%
Blast2go	Phenylalanine metabolism	00360	66%
Blast2go	Chlorocyclohexane and chlorobenzene degradation	00361	66%
Blast2go	Bisphenol degradation	00363	66%
Blast2go	Tryptophan metabolism	00380	66%
Blast2go	Cyanoamino acid metabolism	00460	66%
Blast2go	Xylene degradation	00622	66%
Blast2go	Toluene degradation	00623	66%
Blast2go	Polycyclic aromatic hydrocarbon degradation	00624	66%
Blast2go	Chloroalkane and chloroalkene degradation	00625	66%
Blast2go	Naphthalene degradation	00626	66%
Blast2go	Aminobenzoate degradation	00627	66%
Blast2go	Styrene degradation	00643	66%
Blast2go	Limonene and pinene degradation	00903	66%
Blast2go	Diterpenoid biosynthesis	00904	66%
Blast2go	Brassinosteroid biosynthesis	00905	66%
Blast2go	Carotenoid biosynthesis	00906	66%
Blast2go	Phenylpropanoid biosynthesis	00940	66%
Blast2go	Flavonoid biosynthesis	00941	66%
Blast2go	Isoflavonoid biosynthesis	00943	66%
Blast2go	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945	66%
Blast2go	Isoquinoline alkaloid biosynthesis	00950	66%
Blast2go	Glucosinolate biosynthesis	00966	66%
Blast2go	Biosynthesis of type II polyketide products	01057	66%
Blast2go	Biosynthesis of phenylpropanoids	01061	66%
Blast2go	Biosynthesis of terpenoids and steroids	01062	66%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	66%
Blast2go	Biosynthesis of plant hormones	01070	66%
Blast2go	Metabolic pathways	01100	66%
Blast2go	Biosynthesis of secondary metabolites	01110	66%

Source	GOs	Term	Type	Identity
Blast2go	sporopollenin biosynthetic process	GO:0080110	Biological Process	66%
Blast2go	medium-chain fatty acid biosynthetic process	GO:0051792	Biological Process	66%
Blast2go	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen	GO:0016709	Molecular Function	66%
Blast2go	iron ion binding	GO:0005506	Molecular Function	66%
Blast2go	cell part	GO:0044464	Cellular Component	66%

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
305			10	90	0.90298
306		90		10	0.90298
319		10	90		0.90298
322		90	10		0.90298
323	10	90			0.90298
329		10		90	0.90298
331			10	90	0.90298
332	90			10	0.90298
335		10		90	0.90298
420	57			42	1.0
441		87		12	0.992554
473		11		88	0.923564

SSRs (tot: 1)

Start position	End position	Sequence	Length
28	44	CAGAC CAGAC CAGAC CA	17

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain