SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene11430

Length: 1236 nt

Origin of reads: Biogeco2 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene11430 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	chloroplast ATP phosphoribosyl transferase [Alyssum lesbiacum]	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	62%
Blast2go	atp phosphoribosyl transferase	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	ATP phosphoribosyltransferase.	EC:2.4.2.17	-	0.0	81%

Source	KEGGs	Term	Identity
Blast2go	Histidine metabolism	00340	81%
Blast2go	Biosynthesis of alkaloids derived from histidine and purine	01065	81%
Blast2go	Biosynthesis of plant hormones	01070	81%
Blast2go	Metabolic pathways	01100	81%
Blast2go	Biosynthesis of secondary metabolites	01110	81%

Source	GOs	Term	Type	Identity
Blast2go	histidine biosynthetic process	GO:0000105	Biological Process	81%
Blast2go	ATP phosphoribosyltransferase activity	GO:0003879	Molecular Function	81%
Blast2go	magnesium ion binding	GO:0000287	Molecular Function	81%
Blast2go	chloroplast	GO:0009507	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Sma3	ATP phosphoribosyltransferase HisG	IPR001348	-	-
Sma3	Histidine biosynthesis HisG, C-terminal	IPR013115	-	-
Sma3	ATP phosphoribosyltransferase, catalytic domain	IPR013820	-	-
Sma3	ATP phosphoribosyltransferase, conserved site	IPR018198	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKY9

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 160 aas, putative chimeric sequence, atg_distance in limit (1-15): atg_distance = 6, your sequence is shorter than subject: 252 - 413

Fln protein: MALGNAQLSSYKTNINLEALHPFKNRVKRYSVKFSVQCHCSTTLHDSPTLSKEAELIKALTDRSGDGNVNAVAQRNVIRLGLPSKGRMADGALSLLQNCQLGVRQVNPRQYVAHVPELCNLEVWFQRPKDIVWKLLNGDLDLGIVGNDTVSEHAQGHEELILVHDALGFGKCRLSLAIPNDGVYKNICTLGELATMPQWTTEKPLRIATGYTHLGKTFAKEKGLKHVTFSTADGALEAAPAVIPNLSTVKV*

Protein Length: 253

Fln nts: TTTTTTTGCAAGAG_-_ATGGCTTTAGGAAATGCCCAACTATCTTCATACAAAACCAATATCAATTTGGAAGCACTGCATCCATTTAAGAACAGAGTTAAACGCTATTCCGTAAAATTTTCCGTGCAATGCCACTGCTCTACAACTCTTCACGACAGCCCGACGCTTAGCAAAGAAGCAGAATTGATCAAGGCATTGACGGATCGAAGTGGGGATGGGAATGTTAATGCTGTAGCACAGCGCAATGTGATTCGTCTGGGATTGCCCAGCAAAGGCCGTATGGCCGATGGCGCCTTGTCTCTGCTACAGAATTGTCAGCTTGGAGTTAGACAAGTCAATCCTCGACAATATGTTGCTCATGTCCCAGAGCTTTGCAACCTAGAGGTATGGTTTCAACGGCCAAAAGATATTGTGTGGAAACTTCTCAATGGGGATCTAGACCTTGGAATTGTTGGGAATGACACAGTCTCTGAACATGCACAGGGACATGAAGAGTTAATCTTAGTGCACGATGCTCTTGGTTTTGGGAAGTGTCGCTTGTCTCTCGCTATTCCAAATGATGGGGTGTATAAGAATATCTGCACGTTGGGTGAATTAGCAACAATGCCTCAATGGACGACAGAAAAGCCCTTGCGAATTGCTACAGGATATACTCATCTGGGTAAAACGTTTGCAAAGGAGAAGGGACTAAAACATGTAACATTTTCGACAGCAGATGGGGCACTAGAAGCAGCTCCAGCGGTTATTCCTAATCTCAGCACTGTTAAGGTCTGA___TTTGCTAGGATCAAATTTCCCAGACAAGGTTATGTCTTACTATTATTTAGAAGAACATAGGTAATTATTTAAGCAGGCCTGTTTGTAACCAGAAAAGGCAGCATGAATAAGCTGACAATCCTATGAAAATGTCACCGCATAGGCTTCATTTATAATATGGGCAGTAGCTTGATGGTAACACAAGCAGATGGTATGATGAGCCTGGTTCTTGTTTCATGAAGCAGATTTGTTATTGCCTATAGCTATGCAGATAGCAGATTAATGGTCAATTTTCCAATGGTTACAATGATGGGTTTCTGGTTGGTTTTAACCTTGGGTTAAATCTTCAGCTTTCTTGCAGAAATAATGCTGGTTACCAGTCAAGATAAGCCACCTAACCATAATTCCATAGATGACTACAATTGATGATGATTAGCTGCAAACTATTACAAGCTTTGCCCAAGTGGTCAATTAGATGGAGATAAGT

Fln Alignment:

Contig11430___KRYSVKF-SVQCHCSTTLHDSPTLSKEAELIKALTDRSGDG--NVNAVAQRNVIRLGLPSKGRMADGALSLLQNCQLGVRQVNPRQYVAHVPELCNLEVWFQRPKDIVWKLLNGDLDLGIVGNDTVSEHAQGHEELILVHDALGFGKCRLSLAIPNDGVYKNICTLGELATMPQWTTEKPLRIATGYTHLGKTFAKEKGLKHVTFSTADGALEAAPAV
B8LKY9_______________KRRGLRFDSLRCQSSSA---STAVSKD------LSTQVGNGFPESNAV-ERNVVRLGLPSKGRMATDTLDLLKDCQLAVRQVNPRQYVADIPGLSNLEVWFQRPKDVVRKLLTGDLDLGIVGIDTVSEFGQGNEDLIFVHDALEYGECRLSIAIPKYGIFQNISSMDELATMPEWTENRPLRITTGFTYLGPKFVKEKGLKHVKFSTADGALEAAPAM

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
980	33		66		0.997452
1204		40		60	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain