SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene11331

Length: 2146 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene11331
AGCAATCAGGAACTACTTAACATTGCCCGTTCAGCGTGCTGCAAATTTAATCTCTGTGCTGTTTTGGAAGAAAAATATGGCCTTTGCCAGAACGCATCTACATCAAGGCTGCCAGGCTTTGCAGTGAAGCAAATATCAGAGTAGAATGGCACAGGGCAGGCTTTGTTTGCCCTAAGCAGTGCAAACATATGGAAGAGTCCGAGCATGGTATCATATTAACCCCTCTTCCTGATGTGTGCTTCAGTTCTCTGCCTGCTCAATTGGATGATCTGAAAATGGTGGCCAGCGAGAATGGTAATGAGGGGACATGGGAGAAGGCTGAAAGTCACTTGGTTCTCACGCCAACTGAATTTGTAAGAAGTTATCAAGAAAAAGCTTTTGTCATCTGTGAGGATTTGAGCTTTGGGAAAGAAGCATTGCCAGTCCCTTGTGTGATTGATGAAGACTTAATTGATCCATCTATTTATGCTCTCTATAAAGAGGGCAAAGACCTGAAGTTGGACACATACATGCAGCATTTCACCTACATTACTGAGAGGCTGCTGGACCCTTCACTCGGTCTTGACACAAAGAGCTCACAACTGGGATGTATGTGTACACAACCACTGTGCTTTCCGGAATCATGTGATCATGTTTACCTCTTCGACAATGACAATGATGATGCAGAAGACATTTATGGACAACCCATGCATGGTAGATTTCCATATGATGAAAATGGTCGAATAATTTTGGAGGAAGGGTTCTTGGTATATGAATGCAACTCTATGTGCAGCTGTAATAAAGAATGCCCAAACCGGGTGCTGCAGAAGGGAGTGCAAGTCAAAATTGAAGTATACAAAACAAAGCATAAGGGCTGGGCAGTTAGAGCTGCACAAGCAATTTCACGTGGGACATTCATTTGTGAATACCTTGGAGAGGTCTTAAATGATCAAGAAGCAAATAAAAGAGGAGAGAGATATGACAATGAAGGCTGTAGCTACCTATATGATATTGATGCCCATATTGATACAAGTGATTTGATTGATGGTGTACAACCATATGTTATTGATGCTACCAAGTATGGGAATGTTGCACGCTTTATAAATCACAGTTGCTCGCCAAACCTAGTAAATTACCAAGTATTAGTGGAGAGCATGGATTGCCAGCTTGCACATATTGGCCTTTATGCGAGTCGAGATATTGCTTTTGGGGAAGAGCTGGCTTATGATTATCGTTACAAGCTACTACCTGGCAAGGGATGCCCCTGTAACTGTGGGGCTAGTAATTGCCGTGGAAGGTTGTACTAGAGGGTGAGTTTGCAGTTCAGCAATCATAGACTCTCTATTGTTTCCTCACATAAATACTATCAATGGAAGCAGGAGCAAAGCTTGTAACGCTTCAGATGGTCAATGTGCATATTTGAGTCTATAATATTAAGGTGAGGTAAGGATCACAAGATCTTACTTTAACATATATGTTGAAGTTCCCCTTCTTATGTGGTATTGAAGCAGAGCCTATGATTTAATCTTCTCATAGTTCAATGTAAGTGAATTATAGTGTCATCAGCCTTTACAGAACAGATTTGTAAAGTGAAAATTCTGTACATGTTACAATTAGTTTCCAGAGCTCAGCTAACAGGATAGCATGTCAATGTGGAATAAAGAACACAAGGAATTGATAGTGAGATAATGCATTAATTAAATTGACTTTGAGGTGACCAATAAGTCACAAAAATAGTCAGTTTTTCCTTCTTAAGCAAGCCATGTGTTACTGCTTCCATTCTTAATCAAATTCACAGATTTATTCACTGGAGCAGTGAAACAAAACTATGCTTACCATATCTATGTAATTTTCCTGCAGGCATTGTTCTGATGGTGACCCTTTTTGGGTCGAAGTCTTTACAAAGCTGAATGCACTTGAAATGGAAATAGAAAATGTAGTTTGTCATACCACAGTGTGTCATGGTTATGTGGTAACAAATTCTATGGAAGCTTTATGTAATATGTGAGAGTTGTGTTATTCTATTGATGCACCAGAAAATATGTATAATATTATTTTGATCAAAGTGGGTGCACCTCGGTGTTTCTATTTTCATGTTTACTGTGATTATAGCAAACTGACTTTTGCTGCTCCATTTCATTTCACACGTTTCCAGACAAAATCAAAC

Ace file of the UniGene sp_v2.0_unigene11331

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Set domain protein, putative n=1 Tax=Ricinus communis RepID=B9S8S4_RICCO	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	31%
Blast2go	histone-lysine n-methyltransferase suvr5-like	-	-	67%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring one-carbon groups, Methyltransferases.	EC:2.1.1.-	-	0.0	67%

Source	KEGGs	Term	Identity
Blast2go	Ubiquinone and other terpenoid-quinone biosynthesis	00130	67%
Blast2go	Tetracycline biosynthesis	00253	67%
Blast2go	Histidine metabolism	00340	67%
Blast2go	Tyrosine metabolism	00350	67%
Blast2go	Phenylalanine metabolism	00360	67%
Blast2go	Tryptophan metabolism	00380	67%
Blast2go	Benzoxazinoid biosynthesis	00402	67%
Blast2go	Selenocompound metabolism	00450	67%
Blast2go	Biosynthesis of 12-, 14- and 16-membered macrolides	00522	67%
Blast2go	Polycyclic aromatic hydrocarbon degradation	00624	67%
Blast2go	Methane metabolism	00680	67%
Blast2go	Porphyrin and chlorophyll metabolism	00860	67%
Blast2go	Carotenoid biosynthesis	00906	67%
Blast2go	Phenylpropanoid biosynthesis	00940	67%
Blast2go	Flavonoid biosynthesis	00941	67%
Blast2go	Anthocyanin biosynthesis	00942	67%
Blast2go	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945	67%
Blast2go	Isoquinoline alkaloid biosynthesis	00950	67%
Blast2go	Insect hormone biosynthesis	00981	67%
Blast2go	Biosynthesis of type II polyketide products	01057	67%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	67%
Blast2go	Metabolic pathways	01100	67%
Blast2go	Biosynthesis of secondary metabolites	01110	67%

Source	GOs	Term	Type	Identity
Blast2go	chromatin modification	GO:0016568	Biological Process	67%
Blast2go	methylation	GO:0032259	Biological Process	67%
Blast2go	methyltransferase activity	GO:0008168	Molecular Function	67%
Blast2go	nucleus	GO:0005634	Cellular Component	67%

Source	InterPros	Term	Type	Identity
Sma3	SET domain	IPR001214	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Post-SET domain	IPR003616	-	-
Sma3	AWS	IPR006560	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Pre-SET domain	IPR007728	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AA49

Fln msg: your sequence is longer than subject: 366 - 332

Fln protein: MEESEHGIILTPLPDVCFSSLPAQLDDLKMVASENGNEGTWEKAESHLVLTPTEFVRSYQEKAFVICEDLSFGKEALPVPCVIDEDLIDPSIYALYKEGKDLKLDTYMQHFTYITERLLDPSLGLDTKSSQLGCMCTQPLCFPESCDHVYLFDNDNDDAEDIYGQPMHGRFPYDENGRIILEEGFLVYECNSMCSCNKECPNRVLQKGVQVKIEVYKTKHKGWAVRAAQAISRGTFICEYLGEVLNDQEANKRGERYDNEGCSYLYDIDAHIDTSDLIDGVQPYVIDATKYGNVARFINHSCSPNLVNYQVLVESMDCQLAHIGLYASRDIAFGEELAYDYRYKLLPGKGCPCNCGASNCRGRLY*

Protein Length: 367

Fln nts: AGCAATCAGGAACTACTTAACATTGCCCGTTCAGCGTGCTGCAAATTTAATCTCTGTGCTGTTTTGGAAGAAAAATATGGCCTTTGCCAGAACGCATCTACATCAAGGCTGCCAGGCTTTGCAGTGAAGCAAATATCAGAGTAGAATGGCACAGGGCAGGCTTTGTTTGCCCTAAGCAGTGCAAACAT_-_ATGGAAGAGTCCGAGCATGGTATCATATTAACCCCTCTTCCTGATGTGTGCTTCAGTTCTCTGCCTGCTCAATTGGATGATCTGAAAATGGTGGCCAGCGAGAATGGTAATGAGGGGACATGGGAGAAGGCTGAAAGTCACTTGGTTCTCACGCCAACTGAATTTGTAAGAAGTTATCAAGAAAAAGCTTTTGTCATCTGTGAGGATTTGAGCTTTGGGAAAGAAGCATTGCCAGTCCCTTGTGTGATTGATGAAGACTTAATTGATCCATCTATTTATGCTCTCTATAAAGAGGGCAAAGACCTGAAGTTGGACACATACATGCAGCATTTCACCTACATTACTGAGAGGCTGCTGGACCCTTCACTCGGTCTTGACACAAAGAGCTCACAACTGGGATGTATGTGTACACAACCACTGTGCTTTCCGGAATCATGTGATCATGTTTACCTCTTCGACAATGACAATGATGATGCAGAAGACATTTATGGACAACCCATGCATGGTAGATTTCCATATGATGAAAATGGTCGAATAATTTTGGAGGAAGGGTTCTTGGTATATGAATGCAACTCTATGTGCAGCTGTAATAAAGAATGCCCAAACCGGGTGCTGCAGAAGGGAGTGCAAGTCAAAATTGAAGTATACAAAACAAAGCATAAGGGCTGGGCAGTTAGAGCTGCACAAGCAATTTCACGTGGGACATTCATTTGTGAATACCTTGGAGAGGTCTTAAATGATCAAGAAGCAAATAAAAGAGGAGAGAGATATGACAATGAAGGCTGTAGCTACCTATATGATATTGATGCCCATATTGATACAAGTGATTTGATTGATGGTGTACAACCATATGTTATTGATGCTACCAAGTATGGGAATGTTGCACGCTTTATAAATCACAGTTGCTCGCCAAACCTAGTAAATTACCAAGTATTAGTGGAGAGCATGGATTGCCAGCTTGCACATATTGGCCTTTATGCGAGTCGAGATATTGCTTTTGGGGAAGAGCTGGCTTATGATTATCGTTACAAGCTACTACCTGGCAAGGGATGCCCCTGTAACTGTGGGGCTAGTAATTGCCGTGGAAGGTTGTACTAG___AGGGTGAGTTTGCAGTTCAGCAATCATAGACTCTCTATTGTTTCCTCACATAAATACTATCAATGGAAGCAGGAGCAAAGCTTGTAACGCTTCAGATGGTCAATGTGCATATTTGAGTCTATAATATTAAGGTGAGGTAAGGATCACAAGATCTTACTTTAACATATATGTTGAAGTTCCCCTTCTTATGTGGTATTGAAGCAGAGCCTATGATTTAATCTTCTCATAGTTCAATGTAAGTGAATTATAGTGTCATCAGCCTTTACAGAACAGATTTGTAAAGTGAAAATTCTGTACATGTTACAATTAGTTTCCAGAGCTCAGCTAACAGGATAGCATGTCAATGTGGAATAAAGAACACAAGGAATTGATAGTGAGATAATGCATTAATTAAATTGACTTTGAGGTGACCAATAAGTCACAAAAATAGTCAGTTTTTCCTTCTTAAGCAAGCCATGTGTTACTGCTTCCATTCTTAATCAAATTCACAGATTTATTCACTGGAGCAGTGAAACAAAACTATGCTTACCATATCTATGTAATTTTCCTGCAGGCATTGTTCTGATGGTGACCCTTTTTGGGTCGAAGTCTTTACAAAGCTGAATGCACTTGAAATGGAAATAGAAAATGTAGTTTGTCATACCACAGTGTGTCATGGTTATGTGGTAACAAATTCTATGGAAGCTTTATGTAATATGTGAGAGTTGTGTTATTCTATTGATGCACCAGAAAATATGTATAATATTATTTTGATCAAAGTGGGTGCACCTCGGTGTTTCTATTTTCATGTTTACTGTGATTATAGCAAACTGACTTTTGCTGCTCCATTTCATTTCACACGTTTCCAGACAAAATCAAAC

Fln Alignment:

Contig11331___YDENGRIILEEGF-------------LVYECNSMCSCNKECPNRVLQKGVQVKIEVYKTKHKGWAVRAAQAISRGTFICEYLGEVLNDQEANKRGERYDNEGCSYLYDIDAHIDTSDLIDGVQPYVIDATKYGNVARFINHSCSPNLVNYQVLVESMDCQLAHIGLYASRDIAFGEELAYDYRYKLLPGKGCPCNCGASNCRGRL
D5AA49_______________YTEDGRISFTDGNCDTQFEGLNGGPPLVMECGPACRCGSSCRNRVSQRGLAVRVAVVRHPRKGWSLHSLEPITRGAFVCEYAGELLTTVEARERQRHYD----------DAIVNK------------------------HNSCSALLVIREHLPSG--SILARLFFFASRDICEGEELTFCYGIVRKNSKMSPCFCNTPVCCGML

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
97	66		33		0.997452
382		14	85		0.993533
384	14	85			0.993533
385	85			14	0.993533
497	88	11			0.923564
500		11		88	0.923564
507	88			11	0.923564
509	88		11		0.923564
510		88	11		0.923564
511	88	11			0.923564
516			88	11	0.923564
947	80		20		0.995493
1018		16		83	0.994512
1020		16		83	0.994512
1033	83		16		0.994512
1346	12			87	0.992554
1349		85	14		0.993533
1350	85			14	0.993533
1603	20			80	0.995493
1605			20	80	0.995493
1606		80	20		0.995493
1607		80	20		0.995493
1826		25		75	0.996473
1978		80		20	0.995493
1979		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain